Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00581 ATGGCAGGCAAAGATAGTCTCCATTCATCAGGAAATGGGAGGAGAATTCCAATTTTCAATTTCTTTACAGATGCTAGACTAGTTTTCAAATCTGACAATCTTGGTCGTGAAATATTGTCAATTGCATTGCCTTCAGCAATGGCTTTGACAGCTGACCCTATTGCTTCCCTGGTTGACACAGCATTCATTGGTCAAATAGGTCCAGTGGAGCTTGCAGCTGTAGGGGTGTCCATAGCACTCTTCAATCAAATATCAAGGATTGCAATATTCCCACTAGTTAGTGTCACTACCTCTTTTGTTGCTGAAGAAGATACCCTTAATGAAGCCTGTCCTTTAGTAGAGAAGAGTAAATGCTTGGAAGAAGCTCCAATTATGGCTGATGAAATAAAAGAACTAATGCCACGTAAAGACACAGGTGGAAATGATCAAATATTAGATTTGGTTGGTATTGACTTTAAGGTTGAACATAAGAGAAAGCATATCCCTTCTGCTTCATCAGCATTAGTTATTGGTGGTATTATTGGGCTCATCCAGACAATGTTCCTCATATCTGCTGCAAAACCTTTATTGAACTACATGGGGGTAACCTCAGACTCTCCTATGCTAAGCCCTGCTCAGAACTACCTGATATTGAGGTCCCTTGGTGCTCCTGCAGTTCTTCTCTCATTAGCAATGCAGGGAATCTTCCGAGGATTTAAAGACACTAAAACACCTTTATATGCCACATTGGCAGGAGATGTGACCAACATAGCATTGGATCCTTTGTTCATATTTGTTTTCCGTTTGGGTGTCAGTGGTGCAGCTATTGCTCATGTTATATCTCAGTACCTAATTTCTGTTATACTTCTATGGAGCTTGGTGAAAAAAGTTGATCTTATACCTCCAAGCATCAAGCATCTACAGTTTGATCGATTTCTTAAAAATGGCTTTCTTTTACTAATAAGAGTAATTGCTGTAACATTCTGtgtgacactgtcagcatcattagctgcgcgtcagggaccaacatccatggctgcatttcaagtctgcctgcagatttggttagcagtgtcccttcttgctgatggtctggctgttgctggccagGCAATTCTTGCAGGTGCATTTGCCAACAAGGACTATGAAAAGGCCAAGGCAACCGCATCACGAGTAATACAGCTAGGTTTGGTTCTGGGGTTGGCTCTAGCATTCATTCTTGGAACAGGATTGCATTTTGGAGTTAAACTTTTTACAGAAGATGTTAATGTCCTTCACCTCATCAGAATTGGGATTCCGTTTGTAGCAGCCACTCAACCCCTCAACACTTTGGCATTTGTATTTGATGGTATCAACTTTGGGGCATCTGATTTTGCTTATTCAGCCATTTCTTTGGTTGTGGTGGCAATTGTGAGCATAATTTGTCTACTTATTTTATCATCTGCTGGAGGTTTCGTAGGAATTTGGATTGCTTTGACCATCTATATGGGTCTTAGAGCATTTGTTGGCTTTTTGAGGATTGGAACTGGATCAGGAGCTTGGGAGCTGCTTAGAAGCTGA 1539 0.3723 MAGKDSLHSSGNGRRIPIFNFFTDARLVFKSDNLGREILSIALPSAMALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQISRIAIFPLVSVTTSFVAEEDTLNEACPLVEKSKCLEEAPIMADEIKELMPRKDTGGNDQILDLVGIDFKVEHKRKHIPSASSALVIGGIIGLIQTMFLISAAKPLLNYMGVTSDSPMLSPAQNYLILRSLGAPAVLLSLAMQGIFRGFKDTKTPLYATLAGDVTNIALDPLFIFVFRLGVSGAAIAHVISQYLISVILLWSLVKKVDLIPPSIKHLQFDRFLKNGFLLLIRVIAVTFCVTLSASLAARQGPTSMAAFQVCLQIWLAVSLLADGLAVAGQAILAGAFANKDYEKAKATASRVIQLGLVLGLALAFILGTGLHFGVKLFTEDVNVLHLIRIGIPFVAATQPLNTLAFVFDGINFGASDFAYSAISLVVVAIVSIICLLILSSAGGFVGIWIALTIYMGLRAFVGFLRIGTGSGAWELLRS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00581 512 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 8 511 IPR044644 -
Cca04g00581 512 TIGRFAM matE: MATE efflux family protein 44 482 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g00581 512 PANTHER PROTEIN DETOXIFICATION 8 511 - -
Cca04g00581 512 CDD MATE_DinF_like 34 502 IPR044644 -
Cca04g00581 512 Pfam MatE 314 467 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g00581 512 Pfam MatE 163 255 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00581 Cca-Chr4 5840299 5844453 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00581 K03327 - gmx:100780165 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00581 04 5840299 5844453 Cca04g00581 04 5840299 5844453 ECH
Cca10g00381 10 4029567 4034529 Cca04g00581 04 5840299 5844453 ECH
Cca10g00381 10 4029567 4034529 Cca04g00581 04 5840299 5844453 PCT