Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00359 ATGTACGGCGTTAGGTCAATAACAGTGGTGGCGGCGGCGTTGGTATTGCTGGCCCTGAGCTCCGGCGTGGAGGCGTGTCCGCCGTcggacagggcggcgctgctggcgttcaaggcggctctccacgagccctacctcggaatcttcgactcgtggaccggcgccgactgctgccggaagtggtacggcCGCGCGCGCCGCACCGGCTACATGACCGGCTACATATCGCCGGCGATCTGCCGCCTGGCGCGCCTCTCCAGCCTCACCATCGCCGACTGGAAGGGAATCACCGGCGAGATCCCGCGCTGCATCACAGCGCTGCCGTTCCTCCGCATCGTCGACCTCATCGGAAACCGCCTCTCAGGCAACCTCCCCGCGGACATAGGGCGGCTCCACCGGCTGACGGTGCTGAACGTGGCCGACAACGGCATCTCCGGCACGATTCCCGCCTCGGTGGCGAACCTGACGAGCCTGATGCACCTGGACCTCCGCAACAACCTCATCTCAGGGCCCATTCCGAGAAGCTTCGGCAGGCTTCGGATGCTAAGCCGGGCCTTGCTGAGCGGCAACCGGCTTAGTGGGCCCATCCCGGCCTCCATTTCGGAGATTTACCGGCTGGCGGATCTGGATCTGTCTCGTAACCAAATCTCTGGGCCCATTCCGGAGGCCTTGGGTAAGATGGCGGTGCTATCGACGCTGAATTTGGACTTTAACAAACTCTCTGGGCCCATTCCGGTGAGCCTTTTTAGCTCGGGAATAAGTGACTTGAACTTGAGCCGTAACGCGTTGGAGGGGAATATTCCGAACGCGTTTGGGGTTAGGTCTTATTTCACGGTTCTGGACTTGTCGTATAATAAGCTGAAAGGGCCCATACCCAAGTCCATTTCCTCTGCTTCCTATATTGGACACTTGGATTTGAGTCACAACCATTTGTGTGGGAAGATTCCCCTTGGATCTCCCTTTGATCATCTTGAAGCCTCCTCCTTTGTTTACAACGACTGTCTCTGCGGGAAACCACTCAAACCTTGCTAG 1032 0.5233 MYGVRSITVVAAALVLLALSSGVEACPPSDRAALLAFKAALHEPYLGIFDSWTGADCCRKWYGRARRTGYMTGYISPAICRLARLSSLTIADWKGITGEIPRCITALPFLRIVDLIGNRLSGNLPADIGRLHRLTVLNVADNGISGTIPASVANLTSLMHLDLRNNLISGPIPRSFGRLRMLSRALLSGNRLSGPIPASISEIYRLADLDLSRNQISGPIPEALGKMAVLSTLNLDFNKLSGPIPVSLFSSGISDLNLSRNALEGNIPNAFGVRSYFTVLDLSYNKLKGPIPKSISSASYIGHLDLSHNHLCGKIPLGSPFDHLEASSFVYNDCLCGKPLKPC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00359 343 Pfam Leucine rich repeat 133 192 IPR001611 GO:0005515
Cca10g00359 343 Gene3D Ribonuclease Inhibitor 172 251 IPR032675 -
Cca10g00359 343 Gene3D Ribonuclease Inhibitor 28 171 IPR032675 -
Cca10g00359 343 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 8 63 - -
Cca10g00359 343 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 64 343 - -
Cca10g00359 343 Gene3D Ribonuclease Inhibitor 253 343 IPR032675 -
Cca10g00359 343 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 8 63 - -
Cca10g00359 343 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 64 343 - -
Cca10g00359 343 SUPERFAMILY L domain-like 25 342 - -
Cca10g00359 343 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00359 Cca-Chr10 3799888 3801263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00359 71 343 Receptor kinase-like Gene Family AT5G46330 37.276 1.43e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00359 - - gmx:100804739 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00359 10 3799888 3801263 Cca10g00359 10 3799888 3801263 ECH
Cca10g00359 10 3799888 3801263 Cca04g00559 04 5545452 5548159 ECH
Cca10g00359 10 3799888 3801263 Cca04g00559 04 5545452 5548159 PCT