Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00559 ATGGCTAGTGCCGGTGGTAATGTAGTTTTGTCGATGGTACTAGTAACCCTAATGGCTCTAACACCTTCACCCACTAACTCTTGCCCTTCATCTGAATGGGCAGCACTCATGGCCTTCAAGGCAGCCCTAAAGGAACCCTACTCGGGTTTCTTCCATTCATGGAGAGGCACCAACTGCTGCTACCACTGGCACGACATCACCTGCGACCCCACCACGCGCCGCGTCGCCGGAATCACCCTCCGCGGCGGCGAATTCACCGTCACCGGCCACATCTCCCCCTCCATCTGCAACCTCACACACTCTTATGTAAGGTTTACAAATGCACCAAAACAAATACTTCTTAGTATTGTTTATTTCTCTCTTCTCTCCTTTATTGCCATTGTTCCTAACACACACCTCTCCAGCATCACCATCTCCGACTGGAAGGGCATTTCCGGAAACATCCCTCCCTGCATCACAACGCTCCGTTCTCTCCAACTCGTTGACCTCTCCGGCAACCTCATCCACGGCCAAATCCCCTCCGACATAGGGCGCCTCACGCAGCTTACCGTGCTCAACCTCGCAGCCAATCACATCTCGGGGAGAATCCCCACATCGCTCGTCAACCTCTCCAACCTCATGCAACTGGACCTGCGAAACAACGCCATCCAGGGCCCAATTCCATGGGACCTGGGCCGCCTTAAGAGACTGAACCGGGCCTTGCTCAGTCATAACCGCTTAACCGGCCCAATCCCGCGGTCTGTTTCGGACATCTACGGGCTGGCGGAGCTGGACCTGTCGCTGAACCGGTTGTCCGGTTCCATTCCGAGGTCGCTGGGCCGGATGGCGGTTCTGGACTCTCTGAATTTGAAGTACAACAACCTAACGGGGAGGATTCCGTGGAGATTGTTGGGGTCGAGAATGACCCATTTGGATGTGAGTAGAAACTGGTTGAGTGGGCGCATAGCTGATGCGTTTGGGGAGAATTCGTATTTCATAAGCCTTGATTTGTCGCGTAACAACTTGATGGGCCGGGTTCCTAAGTCTTTGGTTTGGGCTACTTACATTGGGTACTTGGATTTCAGTCATAACCGTCTCTGTGGGCGCTTGCCACGTGGCCTGCCCATCAACCATCTTCACCCGAGTGCGTTCGACCACAATCCATGCCTATGCGGGAAGCCGCTAAAACCCTGTTCTCGCCTCTGA 1185 0.5418 MASAGGNVVLSMVLVTLMALTPSPTNSCPSSEWAALMAFKAALKEPYSGFFHSWRGTNCCYHWHDITCDPTTRRVAGITLRGGEFTVTGHISPSICNLTHSYVRFTNAPKQILLSIVYFSLLSFIAIVPNTHLSSITISDWKGISGNIPPCITTLRSLQLVDLSGNLIHGQIPSDIGRLTQLTVLNLAANHISGRIPTSLVNLSNLMQLDLRNNAIQGPIPWDLGRLKRLNRALLSHNRLTGPIPRSVSDIYGLAELDLSLNRLSGSIPRSLGRMAVLDSLNLKYNNLTGRIPWRLLGSRMTHLDVSRNWLSGRIADAFGENSYFISLDLSRNNLMGRVPKSLVWATYIGYLDFSHNRLCGRLPRGLPINHLHPSAFDHNPCLCGKPLKPCSRL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00559 394 Pfam Leucine rich repeat 234 288 IPR001611 GO:0005515
Cca04g00559 394 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Cca04g00559 394 Gene3D Ribonuclease Inhibitor 199 297 IPR032675 -
Cca04g00559 394 Gene3D Ribonuclease Inhibitor 298 394 IPR032675 -
Cca04g00559 394 SUPERFAMILY L domain-like 27 391 - -
Cca04g00559 394 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 127 393 - -
Cca04g00559 394 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 127 393 IPR045273 -
Cca04g00559 394 Gene3D Ribonuclease Inhibitor 31 120 IPR032675 -
Cca04g00559 394 Gene3D Ribonuclease Inhibitor 123 198 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00559 Cca-Chr4 5545452 5548159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00559 79 392 Receptor kinase-like Gene Family AT5G46330 35.119 1.44e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00559 - - gmx:100778852 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00559 04 5545452 5548159 Cca04g00559 04 5545452 5548159 ECH
Cca10g00359 10 3799888 3801263 Cca04g00559 04 5545452 5548159 ECH
Cca10g00359 10 3799888 3801263 Cca04g00559 04 5545452 5548159 PCT