Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00349 ATGGCTGCAACTGCAACCGCAAAACTTTGTCAAGACCATAACAACCAAAGCCACAACCCTGAAATTACAAGGGAAGAAATCCAAACTGCCATAGCCAAAGCAGTGGAATTAAGGGCTCTTCACGCTGCATTAAGACATGGAAGTAGTCCTGGCACAACAACCAATGCTAGATTTCCATCACCTTCCCCTGCTTCTCACTTCTCTTCCCAAGATTACCCTGTTTTCACACCAAGTTATGAAGATGTAGCACACCAGAACCCAACAAAGAGCAGAACTATATCAGAAAGTTGGGATGAGAATGGGGCAGAAGGAGGTAACACCATGGCCCATTCAGATTGCAAGCAAAAATCAGGTTCAATAAAGGGACTACCTTTTGGATTTTCCAATAACCTAGACTCTCACTTGTGTCCTGCTGATGATAGCAAATCTGTGAGTGGTTCTTGTGCAAATCACATTACTGTTCTCCAAACATCACCTTCCCCTGCAAATGACTACTTCAAATCAAGGAGGAGAAACAGTTTGGGGGACTTGAAGCCCTCATCTTCCTGCAATAGGTGCAACCCTGCTGTGATAACTAGTGAATATGATAACACAAGGAACACCAAAAGCTCCAACATTGTCGTCCCCCTCACAGATTCCCATGCCTCTTTCCAAACCCAACCAAAAAGTAAAGGGGTGATTTCCTGGCTGTTCCCTAGGTTCAAGAAGAAGCATAAGAATGTTATGAGTTCCCCAAACAGGACAGAATCTGAGGAAGTCTCTCAGGTTCTTAAGGACATGGGGGGGATAATGTCAGTTGAGGCACTGAAGAGGGAACTAATGGAGGCAAATGAGAGTAGAGATGCTGCCTTGTTGGAAGTTTCTGAGATGAGATCTTCACTGGGGGAACTCAAACAAAAGCTTGAGTACTTGGAAAGTTATTGTGAAGAGTTGAAGAAATCTTTGAGGCAAGCAATGCACACCAAAGATACTACACTTTCTGAAAAGCTCAATAACCCTCCCCAGAGAGGATCACCCTTTGATGGGAATGGAGAAAATTTGATGCCTGTGGGGGAGGAGGCTATGGTAGAAGGCTTCTTGCAGATAGTGTCAGAATCAAGGCTATCAGTAAAACAATTTTGCAAGACCCTTATATGCCAAATTGAAGAAACTGATCACTCTTTGATGGACAACTTGAACTTGCTCCTCCAACCATATAGGCTTTCCTTGAATTCAAAGTACTCGAAGGCAGTTCTTTACCATTTTGAAGCCTTCATAAACCAGTCCTTCTACCAAGACTTTGAGAACAGTGTGTTCCAAAAGAATGGAAGCACAAAGTTCTTAGACCCTAGACAGGATCGCCAAGCACAGTTCTCATCATTTGTTGCACTTAGGAATTTGAGCTGGAACGAGGTGCTTAGAAAGGGTACCAAGTATTACAGTGAAGAGTTCAGCAAGTTCTGTGATCAGAAAATGAGTTGCATCATCACTTCGCTGAATTGGACAAGGCCTTGGCCTGAACAACTCCTTCAGGCTTTCTTTGTGGCAGCAAAGTGCATATGGTTGCTGCATTTGCTGGCATTTTCTTTCAACCCTCCATTGGGAATTTTAAGGGTTGAAGAGAATAGAAGCTTTGATCCTCACTACATGGAAGATTTGGTTACTGATAGACAAAGGTCACAAGGTTCTAGCAGGGTTAAGATCATGGTGGTGCCAGGGTTCTATGTTCAGGATAGGATATTGAGGTGTAGAGTTATTTGCAGGCACAAATCTGCACCCTAA 1761 0.4344 MAATATAKLCQDHNNQSHNPEITREEIQTAIAKAVELRALHAALRHGSSPGTTTNARFPSPSPASHFSSQDYPVFTPSYEDVAHQNPTKSRTISESWDENGAEGGNTMAHSDCKQKSGSIKGLPFGFSNNLDSHLCPADDSKSVSGSCANHITVLQTSPSPANDYFKSRRRNSLGDLKPSSSCNRCNPAVITSEYDNTRNTKSSNIVVPLTDSHASFQTQPKSKGVISWLFPRFKKKHKNVMSSPNRTESEEVSQVLKDMGGIMSVEALKRELMEANESRDAALLEVSEMRSSLGELKQKLEYLESYCEELKKSLRQAMHTKDTTLSEKLNNPPQRGSPFDGNGENLMPVGEEAMVEGFLQIVSESRLSVKQFCKTLICQIEETDHSLMDNLNLLLQPYRLSLNSKYSKAVLYHFEAFINQSFYQDFENSVFQKNGSTKFLDPRQDRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCIITSLNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSFNPPLGILRVEENRSFDPHYMEDLVTDRQRSQGSSRVKIMVVPGFYVQDRILRCRVICRHKSAP 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00349 586 Coils Coil 266 286 - -
Cca10g00349 586 MobiDBLite consensus disorder prediction 82 115 - -
Cca10g00349 586 MobiDBLite consensus disorder prediction 1 21 - -
Cca10g00349 586 MobiDBLite consensus disorder prediction 46 69 - -
Cca10g00349 586 Coils Coil 294 314 - -
Cca10g00349 586 PANTHER CYCLIN-DEPENDENT KINASE-LIKE PROTEIN 1 585 IPR042316 -
Cca10g00349 586 MobiDBLite consensus disorder prediction 82 101 - -
Cca10g00349 586 MobiDBLite consensus disorder prediction 47 69 - -
Cca10g00349 586 PANTHER - 1 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00349 Cca-Chr10 3708323 3710888 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00349 - - gmx:100786740 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00349 10 3708323 3710888 Cca10g00349 10 3708323 3710888 ECH
Cca10g00349 10 3708323 3710888 Cca04g00552 04 5459215 5462258 PCT