Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00552 ATGGCCGCAACAGCAACTTCAGCACAGGCTTTCAAGGACTACAAGGACAGCAACAATGGCAACCCTGAAATTACGAGGCATGAAATTCAAGCTGCCATAGCCAAAGCTGTGGAGTTAAGGGCTCTTCACGCGGCTTTAATGCGAGGAAATAGCCCAGTCAATGCTAGATTACCATCCCCTTCCCCTGCTTCGCGCCCTGTTTCTCACTTCTCTGCCCAAGATTACCCTGTTTTCACTCCTAGCTATGAAGATGACCCACTGGTGGGGTACAATCAAAACCCCATGAAAAGCGTATCAGTATCAGAAAGTTGGGATGGGAGTGTGTTAGAAGGAGGAAACAGCATAGAAACCATTGTGGCAGATTACAAGGAGAAGTCAAGTTCAAGAAAGGGACTATTTTCTAGTTTTGCCAACCTTGAATCTCACATATGTACTACTGATGATAACAAATCCATGACCGGCTCTTGTGCAAATCAAATTACTGTTCTTCAAACTTCACCAGCAAATGACTATTTTAAGTGTAAGAGGAGAAACAGTATGGAGGATTTCAAGTCCATATCCTCCTCCTCTTGCAATAAATGTAACCCTCCCACCATAACTAGTGAATTTGAGAATGCAAGGAACAGCAAGAGTTCCAACATTGTTGTCCCAGTCACAGATTCCCACACATCTCTTCAACCACAACCCAAAAGCAAAGGGGTGATTTCTTGGTTGTTTCCTAGGCTAAAGAAGAAGCATAAGAATGAGAATTCTCCCAATAGAGCAGAATCTGAAGATGTTTCTCAGGTTCTCAAGGACTTGGGAATAATGTCAATTGAGACATTGAAGAAAGAGCTGGTGGAAGCGAACGAGAACCGAGATGTGGCCTTAATGGAAGTTTCTGAGATGAGAAATTCATTGGGGGAGCTGAAACAGAAGCTTGAGTACTTGGAGAGTTATTGTGAAGAGCTGAAGAAAGCTTTGAAGCAAGCGATGCAGACAAGGGACTCTCAACTTTGTGACCAACTTAGTAGTCTTCCTCAGAGAGGGAAATCATTTGAGGGGAATGGAGAAAATTTGATGCCTGTGAGTGAGGAAGTAATGGTAGAGGGATTCTTGCAGATAGTGTCAGAGTCCAGATTATCAGTGAGGCAGTTCTGCAAGACCCTTATAAACCACATTGAAGAAACTGATCATTCTCTGACAGAAAACTTGAACTTGCTTCTCCAACCGTATAAGCTATCTCTGAATTCCAAGCACTCAAAGGCAGTGCTATACCATTTTGAAGCTTTCATAAACCAGTCTCTCTACCAAGACTTTGAGAATTGTGTTTTCCAAAAGAACGGTTGCTCAAAATTCCTAGACCCTCAGCAGGATCGTCAAGCACAATTCTCCTCATTTGTTGCCCTTAGGAATTTGAGCTGGAATGAGGTACTGAGAAAGGGAACAAAATATTACAGTGAAGAGTTTAGCAAGTTTTGTGACCAGAAAATGAGTTGTATCACCACTAGTCTAAAATGGACAAGACCTTGGCCTGAACAACTACTTCAAGCTTTCTTTGTGGCAGCAAAATGCATGTGGCTGCTACATTTGCTTGCATTTTCTTTCAATCCACCTTTGGGAATTTTGAGGGTTGAAGAGAATAAAACCTTTGATCCTCACTACATGGAAGATATGTGTACGAGGTCACAAGGTCCAAGCAGAGTTAAGATCATGGTGATGCCAGGGTTTTATGTTCAGGATAGGGTCTTGAGGTGTAAAGTTCTTTGCAGGTACAAGTCTGCAGCCTAA 1770 0.426 MAATATSAQAFKDYKDSNNGNPEITRHEIQAAIAKAVELRALHAALMRGNSPVNARLPSPSPASRPVSHFSAQDYPVFTPSYEDDPLVGYNQNPMKSVSVSESWDGSVLEGGNSIETIVADYKEKSSSRKGLFSSFANLESHICTTDDNKSMTGSCANQITVLQTSPANDYFKCKRRNSMEDFKSISSSSCNKCNPPTITSEFENARNSKSSNIVVPVTDSHTSLQPQPKSKGVISWLFPRLKKKHKNENSPNRAESEDVSQVLKDLGIMSIETLKKELVEANENRDVALMEVSEMRNSLGELKQKLEYLESYCEELKKALKQAMQTRDSQLCDQLSSLPQRGKSFEGNGENLMPVSEEVMVEGFLQIVSESRLSVRQFCKTLINHIEETDHSLTENLNLLLQPYKLSLNSKHSKAVLYHFEAFINQSLYQDFENCVFQKNGCSKFLDPQQDRQAQFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCITTSLKWTRPWPEQLLQAFFVAAKCMWLLHLLAFSFNPPLGILRVEENKTFDPHYMEDMCTRSQGPSRVKIMVMPGFYVQDRVLRCKVLCRYKSAA 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00552 589 Coils Coil 272 292 - -
Cca04g00552 589 MobiDBLite consensus disorder prediction 1 22 - -
Cca04g00552 589 Coils Coil 300 327 - -
Cca04g00552 589 PANTHER CYCLIN-DEPENDENT KINASE-LIKE PROTEIN 1 589 IPR042316 -
Cca04g00552 589 MobiDBLite consensus disorder prediction 1 18 - -
Cca04g00552 589 PANTHER - 1 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00552 Cca-Chr4 5459215 5462258 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00552 - - gmx:100814681 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00552 04 5459215 5462258 Cca04g00552 04 5459215 5462258 ECH
Cca10g00349 10 3708323 3710888 Cca04g00552 04 5459215 5462258 PCT