Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00341 ATGGCTCACAACGTGCTTTTACTTCTCTCCCTCTTCGCTTTTGCTATCACATTACCCTCCTTCACTGTTGGAGAACCTGTTGCTCCTATTCTCGACGTTTCTTCTCTTAATCGAAGTACTTTTCCCAATGGCTTCATTTTTGGGGCAGGATCCGCGTCCTACCAGTACGAAGGTGGAGCAAAAGATGGTGGTAAAGGACAAAGCATATGGGACACCTTCACCCATAAATATCCAGATAAGATAGTGGATAGAAGTACTGGAGATGTCGCTGTCGACCAATATCACCGCTACAAGGAAGATGTTGGGATCATGAAGTATATGAATTTGGATGCTTATAGATTCTCCATCTCTTGGCCAAGAATTCTCCCAAAGGGAAAGTTGAACGGAGGTATAAATCAGGAAGGAATCAAATATTATAACAACCTCATCAACGAATTATTAGCTAATGGTATACAACCATTTGTGACTCTTTTTCATTGGGATCTTCCTCAAGCTTTGGAAGATGAGTATGGCGGCTTCTTAAACCCTCGTATTATACATGATTTTCAAGACTTTGCTGAAGTTTGTTTCAAGGAATTTGGAGATAGAGTGAAACATTGGGTTACTTTAAATCAACCATATACTTATAGTACTGGTGGCTATGCAACTGGAGTGAAAGCACCAGGTCGATGTTCTAAATGGTCGAACCCAAAATGCATTGGTGGTGATTCAGGGACAGAGCCTTATATAGTTTCACATCACCTACTTCTTGCTCATGCAGCAGCTGTTCAAGTGTACAAAAAGAAGTATCAGACATCTCAAAAAGGTACAATAGGCATAACCCTTGTCTCTCATTGGTATGTGCCAATTTCAAATAAAAAATTAGACCAAGATGCTGCTGGGAGAGCAATTGACTTCATGCTTGGATGGTTTATAGAGCCACTAACAACAGGAAATTATCCTCAAAGCATGCGATCCCTAGTTGGAGGACGATTGCCAAAATTCTCAAAACAACAAGCCAAATTAGTAGTGGGTTCATTTGATTTTATTGGTTTAAATTATTACACTGCTAATTATGCTGGTGATGCACCTCAACTAAGGAATGCTAGACCCAGTTACCTCACTGATTTTCATGCCAAACTTACGACTCAACGCAACGGGGTTCCCATAGGTTCAAATGCTGCTTCAAGTTGGTTATATGTTTATCCCAAAGGAATTCGTGAATTATTACTCTATGTCAAGAACAAGTACAACAATCCATCCATTTACATTACTGAAAATGGTATCGATGAGTTTAATGATCCAACATTATCACTTGAGGAAGCTCTTGTAGATACTCATAGAATAGATTATTATTATCGTCATCTCTTCTATCTTCAACATGCAATCAAGGATGGAGCAAATGTAAAAGGATATTTTGTATGGTCATTGCTGGACAATTTTGAATGGGCTAATGGTTATACAGTGCGATTTGGAATGAACTTTGTGGACTTCAAAAATGGTCTGAAGAGATACCAAAAACTCTCAGCAAAATGGTTCAAGAACTTTCTCAAAAAATAA 1539 0.3879 MAHNVLLLLSLFAFAITLPSFTVGEPVAPILDVSSLNRSTFPNGFIFGAGSASYQYEGGAKDGGKGQSIWDTFTHKYPDKIVDRSTGDVAVDQYHRYKEDVGIMKYMNLDAYRFSISWPRILPKGKLNGGINQEGIKYYNNLINELLANGIQPFVTLFHWDLPQALEDEYGGFLNPRIIHDFQDFAEVCFKEFGDRVKHWVTLNQPYTYSTGGYATGVKAPGRCSKWSNPKCIGGDSGTEPYIVSHHLLLAHAAAVQVYKKKYQTSQKGTIGITLVSHWYVPISNKKLDQDAAGRAIDFMLGWFIEPLTTGNYPQSMRSLVGGRLPKFSKQQAKLVVGSFDFIGLNYYTANYAGDAPQLRNARPSYLTDFHAKLTTQRNGVPIGSNAASSWLYVYPKGIRELLLYVKNKYNNPSIYITENGIDEFNDPTLSLEEALVDTHRIDYYYRHLFYLQHAIKDGANVKGYFVWSLLDNFEWANGYTVRFGMNFVDFKNGLKRYQKLSAKWFKNFLKK 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00341 512 Pfam Glycosyl hydrolase family 1 38 511 IPR001360 GO:0004553|GO:0005975
Cca10g00341 512 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 4 512 - -
Cca10g00341 512 PANTHER GLYCOSYL HYDROLASE 4 512 IPR001360 GO:0004553|GO:0005975
Cca10g00341 512 PRINTS Glycosyl hydrolase family 1 signature 339 353 IPR001360 GO:0004553|GO:0005975
Cca10g00341 512 PRINTS Glycosyl hydrolase family 1 signature 415 423 IPR001360 GO:0004553|GO:0005975
Cca10g00341 512 PRINTS Glycosyl hydrolase family 1 signature 438 449 IPR001360 GO:0004553|GO:0005975
Cca10g00341 512 PRINTS Glycosyl hydrolase family 1 signature 459 476 IPR001360 GO:0004553|GO:0005975
Cca10g00341 512 PRINTS Glycosyl hydrolase family 1 signature 483 495 IPR001360 GO:0004553|GO:0005975
Cca10g00341 512 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 45 59 IPR033132 -
Cca10g00341 512 Gene3D Glycosidases 23 512 - -
Cca10g00341 512 SUPERFAMILY (Trans)glycosidases 29 511 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00341 Cca-Chr10 3618785 3629826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00341 7 506 Glycoside Hydrolase AT5G42260 56.175 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00341 - K01188 gmx:100812431 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00341 10 3618785 3629826 Cca10g00341 10 3618785 3629826 ECH
Cca10g00341 10 3618785 3629826 Cca04g00542 04 5365986 5369931 ECH