Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00542 ATGGCATTCAACGTTTATCTATATCTCTTTCACCTTGGTGTCTTCACTCTTGTTATAAGCTCTTTGGTTACAATCACCCAAACTGTGGCACCTATTCTTGATGTTTCCTCTCTAAGTAGGACTAGTTTTCCTCCAGCTTTCATCTTTGGCACTGCCTCCTCTGCCTACCAGTACGAAGGTGCTGCAAATGAAGGTGGCAGAGGACTAAGTACTTGGGATACCTTTGCTCATCAAAATTCAGAAAAAATATTGGATGGAAGCAATGGAGATGTAGCTGTTGATCAATATCATCGCTATAAGGAAGATGTTGGGATCATGAAATATATGAATATGGATGCTTACAGATTCTCCATCTCTTGGTCAAGGATATTGCCAAAAGGAAAAGTAAGCCAAGGTATAAACCAAGAAGGAATCAAATATTACAACAATCTCATCAACGAGCTTCTGGCAAATGGTCTTCTTCCATTTGTGACCCTTTTCCATTGGGATCTTCCTCAAGCCTTGCAAGATGACTATGGTGGCTTCTTAAGTCCTCATATTGTAAATGATTTCCAAGACTATGCAGAGCTATGCTTCAAGGAATATGGAGATAGAGTGAAGCATTGGATTACCTTTAATGAACCATGGAGTTACAGTATGGGGTCAGAGCCCTACATGAGCTCACACTACCAACTACTTGCTCATGCAGCTGCTGTTAAAATTTATAAAACCAATTATCAGGCATCTCAAAATGGTTTGATAGGCATCACCTTAAATTGTCAGTGGTTTGTTCCATTCTCAAATGACACATTAGATCATCAAGCTGCCCTACGAGCTCTTGATTTCATGTTTGGATGGTTCATGGAACCACTTACAACAGGGAATTATCCAAAAACCATGCAATCCTTGCTGGGAAGCCGATTACCAAACTTCACTGAAGAGCAATCCAAGCTACTTATTGGCTCGTTTGATTTTATTGGACTCAATTACTACACCGCTAATTATGCTGCCCATATATCCAATCCAATTAATAACACGAGCAATACTAGCTATTACCAAGATTCTCGTGTCAATGTTACAACTGAACGTAACGGGACACCTATTGGACCAAGGGCTGCTTCATGTTGGCTTTATGTTTATCCAAGGGGACTTCGAGAACTATTGTTGTACATCAAGATGAAGTATAACAACCCTGTAATTTACATAACAGAAAATGGTATGGACGAGTTCAATGATCCAACCAAATCACTTGAAGAAGCACTCATGGATACTTATAGAATTGATTACTTCTATCGCCATCTTTATTATCTTTTAATTGCGATCAAGGATGGGGTGAAAGTACGAGGATATTTTGCATGGTCACTTCTGGACAACTTCGAATGGAATTCTGGCTACACCTTGCGTTTTGGAATTAACTTGGTCGATTACAAGGATAATTTGAAAAGATACCAAAAGCTCTCTGCCCATTGGTTTAGGAGTTTTCTTCAGAAGTACTAG 1476 0.3943 MAFNVYLYLFHLGVFTLVISSLVTITQTVAPILDVSSLSRTSFPPAFIFGTASSAYQYEGAANEGGRGLSTWDTFAHQNSEKILDGSNGDVAVDQYHRYKEDVGIMKYMNMDAYRFSISWSRILPKGKVSQGINQEGIKYYNNLINELLANGLLPFVTLFHWDLPQALQDDYGGFLSPHIVNDFQDYAELCFKEYGDRVKHWITFNEPWSYSMGSEPYMSSHYQLLAHAAAVKIYKTNYQASQNGLIGITLNCQWFVPFSNDTLDHQAALRALDFMFGWFMEPLTTGNYPKTMQSLLGSRLPNFTEEQSKLLIGSFDFIGLNYYTANYAAHISNPINNTSNTSYYQDSRVNVTTERNGTPIGPRAASCWLYVYPRGLRELLLYIKMKYNNPVIYITENGMDEFNDPTKSLEEALMDTYRIDYFYRHLYYLLIAIKDGVKVRGYFAWSLLDNFEWNSGYTLRFGINLVDYKDNLKRYQKLSAHWFRSFLQKY 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00542 491 PANTHER GLYCOSYL HYDROLASE 6 490 IPR001360 GO:0004553|GO:0005975
Cca04g00542 491 Gene3D Glycosidases 23 490 - -
Cca04g00542 491 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 6 490 - -
Cca04g00542 491 PRINTS Glycosyl hydrolase family 1 signature 315 329 IPR001360 GO:0004553|GO:0005975
Cca04g00542 491 PRINTS Glycosyl hydrolase family 1 signature 393 401 IPR001360 GO:0004553|GO:0005975
Cca04g00542 491 PRINTS Glycosyl hydrolase family 1 signature 416 427 IPR001360 GO:0004553|GO:0005975
Cca04g00542 491 PRINTS Glycosyl hydrolase family 1 signature 437 454 IPR001360 GO:0004553|GO:0005975
Cca04g00542 491 PRINTS Glycosyl hydrolase family 1 signature 461 473 IPR001360 GO:0004553|GO:0005975
Cca04g00542 491 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 47 61 IPR033132 -
Cca04g00542 491 SUPERFAMILY (Trans)glycosidases 30 489 IPR017853 -
Cca04g00542 491 Coils Coil 484 491 - -
Cca04g00542 491 Pfam Glycosyl hydrolase family 1 41 489 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00542 Cca-Chr4 5365986 5369931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00542 10 490 Glycoside Hydrolase AT5G44640 50.787 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00542 - K01188 gmx:100785608 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00542 04 5365986 5369931 Cca04g00542 04 5365986 5369931 ECH
Cca10g00341 10 3618785 3629826 Cca04g00542 04 5365986 5369931 ECH