Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00334 ATGTTGGCGGTTTCTTTGTTTGGTTTGGGACGAATCGCGTTTGGCAAAACAACAATATCAATATGCTTTTCCTCCAAAACCAATTCAGTGTCCCAAGTTCGAGTCTCTGCGAGTAAAAAAGGAGCCAACAAAAGCGTACAATTTCAACATGTAACCCAACCTCAAATTGAAGACCACAAAGAGATTCGAGGATTTGCACCCACAGGACCAAGTGAATTGGCTCAAAGTGGTGAGGCCCCTGCACATTGGAAAGAGGTTCTTGAAGGGATTCGCCTAATGAGGAGTTCGGTAGACGAACATGAACCGGTAGATACTATTGCACGTGACAAAGCTGGTGATACTGTACCTCCTAAGGAAAGAAGATTTTCTGTCCTGGCATCTTCCCTTTTATCGAGCCAAACTAAGGAGCATGTTACTCGTGGAGCTACTCAACGTCTTCGTGAAAATGGTATGCTTACTGCTGATGCAATCAACAAAGCTGATGAAGAAATCATCAAAAAGTTGATTTATCCTGTTGGATTTTATACAAGAAAAGCCAGTTACTTGAAGAAAATTGCTAATATTTGTCTCGTGAAGTATGATGGAGACATACCGAGCTCAATTGAGGAACTACTCTTACTTCCAGGCGTAGGTCCTAAGATCGCTCATCTGGTTATGATTGTTGGATGGAACAATGTCCAAGGGATATGTGTGGATACCCATGTCCACCGCATTTGCAATCGCCTTGGATGGGTTTCGAGATCAGGCTCAAAACAGAAAACATTGACACCAGAAGAAACAAGACAAGCGCTGCAATGGTGGCTTCCGAAGGAAGAATGGGTTCCTATAAATCCTCTTTTGGTAGGATTTGGAAGAGCAATTTGTACTCCTCTACGGCCTCACTGTGGACAGTGTAGTGTAAGTAGGTTCTGCCCATCAGCGTTCAAGTAG 930 0.4344 MLAVSLFGLGRIAFGKTTISICFSSKTNSVSQVRVSASKKGANKSVQFQHVTQPQIEDHKEIRGFAPTGPSELAQSGEAPAHWKEVLEGIRLMRSSVDEHEPVDTIARDKAGDTVPPKERRFSVLASSLLSSQTKEHVTRGATQRLRENGMLTADAINKADEEIIKKLIYPVGFYTRKASYLKKIANICLVKYDGDIPSSIEELLLLPGVGPKIAHLVMIVGWNNVQGICVDTHVHRICNRLGWVSRSGSKQKTLTPEETRQALQWWLPKEEWVPINPLLVGFGRAICTPLRPHCGQCSVSRFCPSAFK 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00334 309 CDD ENDO3c 130 284 IPR003265 GO:0006284
Cca10g00334 309 SUPERFAMILY DNA-glycosylase 115 309 IPR011257 GO:0003824|GO:0006281
Cca10g00334 309 Gene3D Hypothetical protein; domain 2 109 221 - -
Cca10g00334 309 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 70 309 - -
Cca10g00334 309 Pfam HhH-GPD superfamily base excision DNA repair protein 127 254 IPR003265 GO:0006284
Cca10g00334 309 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 70 309 - -
Cca10g00334 309 Gene3D - 222 309 IPR023170 -
Cca10g00334 309 SMART ccc3 287 307 IPR003651 GO:0051539
Cca10g00334 309 Pfam Helix-hairpin-helix motif 192 219 IPR000445 GO:0003677
Cca10g00334 309 Hamap Endonuclease III-like protein 1 [NTHL1]. 79 308 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Cca10g00334 309 ProSitePatterns Endonuclease III family signature. 195 224 IPR004036 -
Cca10g00334 309 SMART endo3end 130 286 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00334 Cca-Chr10 3526362 3530466 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00334 K10773 - gmx:100805799 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00334 10 3526362 3530466 Cca04g00533 04 5213042 5218800 PCT