Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00533 ATGACTATTATACAAGTCTCAAATCGAATACTGGTCGTTTCAGTTCCTTCTCCTTGGGGCATGATGATGTCCAATACAACTCCACGATTTTGCAAAGCCACTCCCTCGAAATCCAATACCAACACACCCACTTCCATTGTTCAAGCTTCTCATTCCCAAGTTCGTGTCTTTGTGAGGAGAAACAAGAGACCCAGAGACAATGACCATCTTCCCTCTACCCAGGACAACAAGGTTTCGGCTACAAAGAAGCTTGGCGTACCAGAAATTGAAGAATTTGCGTACTGTGGAACAAATGAATTGACTCAGTGTAGGAAATCTGAAATGGACTCAAATGTGATTCCTGCAGCAAGTGAAGTTACTTCTCCAAGACCCTCTGGTGAATCACCTGCCCACTGGGAAAAGGTGCTCGAGGGAATTCGCAAAATGAGGTGTTCTGGAGATGCACCAGTAGATACTATGGGATGTGAGAAAGCTGGCGATACACTACCTCCTAAGGAAAGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCAAGCCAAACAAAGGATCCTGTTACTCATGGAGCAATCCAACGCCTTCTTCAAAGTGGTCTGCTTACTGCTGAGGCAATCAATAATGCGGATGAAGAAACCATCAAAAAGTTGATTTACCCCGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATGTGTCTCATGAAATACGAAGGAGACATACCTAGCTCAATTGAACAACTACTTTTACTTCCTGGCATTGGTCCTAAGATGGCTCACTTGGTTATGAATGTTGGATGGGACAACGTCCAAGGAATATGTGTAGATACTCATGTCCACCGCATTTGCAACCGGCTTGGGTGGGTCTCAAGATTGGGCACAAAACAGAGAACTTCGACACCTGAAGAGACAAGAGAGTCACTGCAACGCTGGCTTCCAAAGGAAGAATGGGTTCCAATAAACCCTCTATTGGTAGGATTTGGACAAACAATTTGTACACCTCTGAGACCTCGTTGTGGAGAATGTGGTGTAAGAGAGTTATGCCCCTCAGCCTTCAAGGAGACTTCAAACTCAAGCCCATCTTCCAAGTCCAAAAAGTCTGGACTCAACAAGAAGCTTTAA 1131 0.4377 MTIIQVSNRILVVSVPSPWGMMMSNTTPRFCKATPSKSNTNTPTSIVQASHSQVRVFVRRNKRPRDNDHLPSTQDNKVSATKKLGVPEIEEFAYCGTNELTQCRKSEMDSNVIPAASEVTSPRPSGESPAHWEKVLEGIRKMRCSGDAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDPVTHGAIQRLLQSGLLTAEAINNADEETIKKLIYPVGFYTRKATNLKKIANMCLMKYEGDIPSSIEQLLLLPGIGPKMAHLVMNVGWDNVQGICVDTHVHRICNRLGWVSRLGTKQRTSTPEETRESLQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECGVRELCPSAFKETSNSSPSSKSKKSGLNKKL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00533 376 ProSitePatterns Endonuclease III family signature. 242 271 IPR004036 -
Cca04g00533 376 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 80 376 - -
Cca04g00533 376 Hamap Endonuclease III-like protein 1 [NTHL1]. 128 357 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Cca04g00533 376 MobiDBLite consensus disorder prediction 355 369 - -
Cca04g00533 376 Gene3D - 268 357 IPR023170 -
Cca04g00533 376 SMART endo3end 177 333 IPR003265 GO:0006284
Cca04g00533 376 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 80 376 - -
Cca04g00533 376 SUPERFAMILY DNA-glycosylase 147 364 IPR011257 GO:0003824|GO:0006281
Cca04g00533 376 Pfam Helix-hairpin-helix motif 239 267 IPR000445 GO:0003677
Cca04g00533 376 MobiDBLite consensus disorder prediction 355 376 - -
Cca04g00533 376 Pfam HhH-GPD superfamily base excision DNA repair protein 173 316 IPR003265 GO:0006284
Cca04g00533 376 SMART ccc3 334 354 IPR003651 GO:0051539
Cca04g00533 376 Gene3D Hypothetical protein; domain 2 160 267 - -
Cca04g00533 376 CDD ENDO3c 169 331 IPR003265 GO:0006284
Cca04g00533 376 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 335 351 IPR004035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00533 Cca-Chr4 5213042 5218800 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00533 K10773 - gmx:100818398 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00334 10 3526362 3530466 Cca04g00533 04 5213042 5218800 PCT