Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00329 ATGCCAACGATTTTTCATAGGATTGTGGTTGTTTACGAGGTGCTATACCCATTCCTGGTGAGGCTGATCCCCAAGAAGGTGCGAGCCTTCTTCCCCAGTGCAGGAGGATCTTGGAGCTCCCAGAAGAGCAGAAGAACAAGCATGGACCCGCAGGAGCTGAGGCGCGTGTTCCAGATGTTCGACCGGAACGGCGACGGGAGAATAACGAAGAAGGAGCTGAGCGACTCGCTGGAGAATCTGGGGATCTTCATCCCGGACAAGGAGCTGTCCCTGATGATCGAGAAGATCGACGTGAACGGCGACGGGTGCGTGGACATCGACGAGTTCGGGGAGCTCTACCAGACCATCATGGACGAGCGCGACGAGGAGGAGGACATGCGAGAGGCCTTCAACGTCTTCGACCAGAACGGCGACGGCTTCATCACCGTCGACGAGCTCAGGACCGTCCTCTCCTCCCTCGGCCTCAAGCAGGGTCGGACCGTCGAAGACTGCAAGAACATGATCATGAAGgtcgacgtcgacggcgacggcatggtcgacttcAAGGAGTTCAAGCACATGATGAAAGGGGGTGGCTTCAATGctctcacttga 594 0.5253 MPTIFHRIVVVYEVLYPFLVRLIPKKVRAFFPSAGGSWSSQKSRRTSMDPQELRRVFQMFDRNGDGRITKKELSDSLENLGIFIPDKELSLMIEKIDVNGDGCVDIDEFGELYQTIMDERDEEEDMREAFNVFDQNGDGFITVDELRTVLSSLGLKQGRTVEDCKNMIMKVDVDGDGMVDFKEFKHMMKGGGFNALT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00329 197 CDD EFh 129 189 IPR002048 GO:0005509
Cca10g00329 197 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 48 196 - -
Cca10g00329 197 CDD EFh 52 109 IPR002048 GO:0005509
Cca10g00329 197 ProSiteProfiles EF-hand calcium-binding domain profile. 159 194 IPR002048 GO:0005509
Cca10g00329 197 ProSitePatterns EF-hand calcium-binding domain. 172 184 IPR018247 -
Cca10g00329 197 ProSiteProfiles EF-hand calcium-binding domain profile. 121 156 IPR002048 GO:0005509
Cca10g00329 197 Pfam EF-hand domain pair 51 114 IPR002048 GO:0005509
Cca10g00329 197 Pfam EF-hand domain pair 123 189 IPR002048 GO:0005509
Cca10g00329 197 ProSitePatterns EF-hand calcium-binding domain. 134 146 IPR018247 -
Cca10g00329 197 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Cca10g00329 197 Gene3D - 125 190 - -
Cca10g00329 197 SUPERFAMILY EF-hand 50 190 IPR011992 -
Cca10g00329 197 Gene3D - 23 124 - -
Cca10g00329 197 SMART efh_1 88 116 IPR002048 GO:0005509
Cca10g00329 197 SMART efh_1 125 153 IPR002048 GO:0005509
Cca10g00329 197 SMART efh_1 52 80 IPR002048 GO:0005509
Cca10g00329 197 SMART efh_1 163 191 IPR002048 GO:0005509
Cca10g00329 197 ProSitePatterns EF-hand calcium-binding domain. 61 73 IPR018247 -
Cca10g00329 197 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Cca10g00329 197 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Cca10g00329 197 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 48 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00329 Cca-Chr10 3486928 3487521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00329 7 195 EF-hand Containing Proteins AT2G43290 57.477 6.38e-83 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00329 K13448 - gmx:100527487 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00329 10 3486928 3487521 Cca04g00525 04 5119120 5120231 PCT