Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00525 ATGGATCCATCGGAGGTGAAGCACGTGTTCGAGATGCTGGACCGGAACGGCGACGGGAGAATAACGGTGAAGGAGCTGAGCGAGTCGCTGGAGAATCTGGGGATGGTGATCCCGGAGGAGGAGCTGGAGCAGATGATGGACGCCAACGGCGACGGCTGCGTGGACATGGCGGAGTTCGGGGAGCTGTACGAGTCGATCATGGAGGAGCGTGACGAGGAGGAGGACATGCGGGAGGCCTTCAACGTCTTCGACCAGAACCGCGACGGCTTCATCAGCGTGGAGGAGCTCCGCGCGGTGCTCTCCTCTCTGGGCTTCAAACAGGCCACCACCATCCAGGACTGCAAGAACATGATCACCAAGGTGGACGTTGATGGAGATGGGAGGGTTAATTATAAAGAGTTCAGACAAATGATGAAGGGAGGGATAGGACTACTaggacaaggacaaggacaaggacaaCTCTCTTCTCTTGCTTAA 477 0.5409 MDPSEVKHVFEMLDRNGDGRITVKELSESLENLGMVIPEEELEQMMDANGDGCVDMAEFGELYESIMEERDEEEDMREAFNVFDQNRDGFISVEELRAVLSSLGFKQATTIQDCKNMITKVDVDGDGRVNYKEFRQMMKGGIGLLGQGQGQGQLSSLA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00525 158 ProSiteProfiles EF-hand calcium-binding domain profile. 44 69 IPR002048 GO:0005509
Cca04g00525 158 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Cca04g00525 158 SMART efh_1 5 33 IPR002048 GO:0005509
Cca04g00525 158 SMART efh_1 75 103 IPR002048 GO:0005509
Cca04g00525 158 SMART efh_1 113 141 IPR002048 GO:0005509
Cca04g00525 158 SMART efh_1 41 66 IPR002048 GO:0005509
Cca04g00525 158 Gene3D - 3 141 - -
Cca04g00525 158 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Cca04g00525 158 PANTHER CALMODULIN-LIKE PROTEIN 3 1 141 - -
Cca04g00525 158 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Cca04g00525 158 SUPERFAMILY EF-hand 4 141 IPR011992 -
Cca04g00525 158 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Cca04g00525 158 ProSitePatterns EF-hand calcium-binding domain. 47 59 IPR018247 -
Cca04g00525 158 CDD EFh 79 139 IPR002048 GO:0005509
Cca04g00525 158 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
Cca04g00525 158 Pfam EF-hand domain pair 6 63 IPR002048 GO:0005509
Cca04g00525 158 Pfam EF-hand domain pair 73 139 IPR002048 GO:0005509
Cca04g00525 158 PRINTS Parvalbumin signature 62 80 - -
Cca04g00525 158 PRINTS Parvalbumin signature 84 100 - -
Cca04g00525 158 PRINTS Parvalbumin signature 121 134 - -
Cca04g00525 158 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Cca04g00525 158 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00525 Cca-Chr4 5119120 5120231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00525 1 141 EF-hand Containing Proteins AT1G05990 71.724 4.75e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00525 K13448 - gmx:100796922 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00329 10 3486928 3487521 Cca04g00525 04 5119120 5120231 PCT