Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00324 ATGGCGTTGAACAACGGCGTCCCCGCCACCGGCACCGGCCTGATCGCGAGCTTCGGCGAGATGCTGATCGACTTCGTCCCCACCGTCTCCGGCGTGTCGCTGGCGGAGGCGCCGGGGTTCCTGAAGGCCCCAGGCGGCGCCCCGGCCAACGTGGCGATCGCGGTGGCGCGGCTGGGCGGCAAGGCGGCCTTCGTGGGGAAGCTGGGCGACGACGAGTTCGGGCACATGCTGGCCGGAATCCTGAAGGAGAACGGCGTGAGAGGCGACGGCATCACCTTCGACGAGGGGGCGCGCACCGCCCTGGCCTTCGTGACCCTGCGCGCCGACGGAGAGCGGGAGTTCATGTTCTACCGGAACCCTAGCGCCGACATGCTCCTCCGCCCCGAAGAGCTCAACCTCGAACTCATCAGATCTGCAAAAGTTTTCCATTACGGATCAATAAGCTTGATCGTGGAGCCATGCAGATCGGCACACCTTAAGGCCATGGAAGTTGCGAAAGAAGCTGGGTGCCTGCTTTCGTATGATCCAAACCTTCGGCTACCATTGTGGCCTTCAGCCGAGGAAGCTCGTAAGCAAATACTGAGCATATGGGAGAAGGCTGACCTGATAAAGGTCAGTGATGTGGAGCTTGAGTTCCTCACTGGAAGTGACAAGATTGATGATGATTCTGCTTTGTCATTGTGGCACCCCAACTTGAAGTTACTCCTTGTCACTCTAGGGGAACACGGTTCCAGATACTACACCAAGAATTTCCATGGATCGGTAGATGCCTTCCACGTTAATACAGTTGATACAACTGGTGCCGGTGATTCCTTTGTTGGCGCTCTATTGTCCAAGATTGTCGATGATCAGGCCATACTTGAGGATGAACCAAGGTTAAGAGAAGTACTTAAGTTTGCAAATGCATGTGGAGCAATCACAACCACTAAAAAGGGAGCAATTCCCGCCCTTCCCAAAGAGGAGGACGCGCTGAAACTGATCAAAGGGGCATAG 993 0.5629 MALNNGVPATGTGLIASFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVRGDGITFDEGARTALAFVTLRADGEREFMFYRNPSADMLLRPEELNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGCLLSYDPNLRLPLWPSAEEARKQILSIWEKADLIKVSDVELEFLTGSDKIDDDSALSLWHPNLKLLLVTLGEHGSRYYTKNFHGSVDAFHVNTVDTTGAGDSFVGALLSKIVDDQAILEDEPRLREVLKFANACGAITTTKKGAIPALPKEEDALKLIKGA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00324 330 PANTHER BNAA04G18320D PROTEIN 20 319 - -
Cca10g00324 330 SUPERFAMILY Ribokinase-like 15 326 IPR029056 -
Cca10g00324 330 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 264 277 IPR002173 GO:0016773
Cca10g00324 330 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Cca10g00324 330 PRINTS Ribokinase signature 195 210 IPR002139 GO:0016301
Cca10g00324 330 PRINTS Ribokinase signature 235 246 IPR002139 GO:0016301
Cca10g00324 330 Gene3D - 13 330 IPR029056 -
Cca10g00324 330 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016773
Cca10g00324 330 PANTHER HEXOKINASE FAMILY MEMBER 20 319 - -
Cca10g00324 330 Pfam pfkB family carbohydrate kinase 14 319 IPR011611 -
Cca10g00324 330 CDD bac_FRK 14 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00324 Cca-Chr10 3430695 3434938 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00324 K00847 - gmx:100803713 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00324 10 3430695 3434938 Cca04g00522 04 5099920 5103176 PCT