Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00522 ATGGCCCTTCCTCCCACCGGCGCCGGCCTCATCGTCAGCTTCGGCGAGATGCTCATCGACTTCGTACCCACCGTCTCCGGCGTCTCCCTCGCCGAGGCTCCGGGCTTCCTCAAGGCTCCCGGCGGCGCCCCCGCCAACGTCGCCATCGCCGTCGCCAGGCTCGGCGGAAAAGCCGCCTTCATCGGCAAGCTGGGCGACGACGAGTTCGGGCAGATGCTGGCCGGAATCCTCCAGGAGAACAACGTGAAAGCCGACGGCATCAAGTTCGACGAGGGCGCGCGCACCGCACTGGCCTTCGTGACCCTACGCGCCGACGGAGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTTCTCACGCCGGAAGATCTCAACCTCGAACTCATCAGATCGGCAAAAGTATTCCACTATGGATCGATAAGCTTGATCGTGGAGCCATGCAGATCGGCACACTTGAAGGCGATGGAAGTTGCGAAGGAAGCAGGGTGCCTGCTCTCTTATGACCCAAACTTGAGGCTACCATTGTGGCCCTCAGCCGAGGAAGCGCGTCAGCAAATACTAAGCATATGGGACAAGGCTGATGTGATCAAGGTGAGCGACGTGGAACTCGAATTCCTAACCGGAAGTGACAGAATTGATGATGCATCTGCTCTCTCTTTGTGGCACCCCAATTTGAAGTTACTCCTTGTTACTCTTGGGGAACATGGTTCTAGGTACTATACCAAGAATTTCCATGGATCGGTGGAGGCTTTTCATGTCAACACAGTTGATACAACCGGCGCTGGTGATTCGTATGTTGGTGCTCTATTAAGCAAGATTGTCGATGATCAATCCATACTTGAAGATGAACCAAGGTTAAGGGAAGTGCTAAAGTTTGCAAATGCATGTGGAGCAATTACAACTACTAAAAAGGGAGCAATTCCCGCACTTCCCACAGAGGCTGATGCCCTCAATCTGATCAACGAGGCATAG 981 0.5454 MALPPTGAGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFIGKLGDDEFGQMLAGILQENNVKADGIKFDEGARTALAFVTLRADGEREFMFYRNPSADMLLTPEDLNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGCLLSYDPNLRLPLWPSAEEARQQILSIWDKADVIKVSDVELEFLTGSDRIDDASALSLWHPNLKLLLVTLGEHGSRYYTKNFHGSVEAFHVNTVDTTGAGDSYVGALLSKIVDDQSILEDEPRLREVLKFANACGAITTTKKGAIPALPTEADALNLINEA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00522 326 Gene3D - 9 326 IPR029056 -
Cca04g00522 326 PANTHER HEXOKINASE FAMILY MEMBER 17 320 - -
Cca04g00522 326 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 260 273 IPR002173 GO:0016773
Cca04g00522 326 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 41 65 IPR002173 GO:0016773
Cca04g00522 326 CDD bac_FRK 10 310 - -
Cca04g00522 326 PRINTS Ribokinase signature 36 55 IPR002139 GO:0016301
Cca04g00522 326 PRINTS Ribokinase signature 191 206 IPR002139 GO:0016301
Cca04g00522 326 PRINTS Ribokinase signature 231 242 IPR002139 GO:0016301
Cca04g00522 326 Pfam pfkB family carbohydrate kinase 10 315 IPR011611 -
Cca04g00522 326 SUPERFAMILY Ribokinase-like 11 320 IPR029056 -
Cca04g00522 326 PANTHER BNAA04G18320D PROTEIN 17 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00522 Cca-Chr4 5099920 5103176 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00522 K00847 - gmx:100780082 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00324 10 3430695 3434938 Cca04g00522 04 5099920 5103176 PCT