Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00314 ATGGCGAATCTTGTTCCCGGGGTGCTTCTGAAGCTTCTTCAGCACATGAACACCGATGTGAAGGTTGGTGGAGAGCACAGGTCTTCGCTGTTGCAAGTTGTGAGCATTGTTCCGGCACTTGCAGGGGGTGAACTGTTCCCAAATCAAGGTTTTTATCTCAAAGTCTCTGATTCATCTCACGCCACTTATGTGTCTCTACCTGATGAACATGATGATCTTATTTTAAGTGATAAGATTCAGTTGGGGCAGTTTGTGTTCGTTGATCGTTTGGAGGGTGCTTCTCCTGTCCCCATTCTTCGTGGGGTTAGGCCTGTTCCTGGGAGACACCCTTGTGTTGGAACCCCTGAGGATATTGTTGCTACTCATTCCCTTGCATTCCTTGACAACGGTAAGGACAAGAATGGGGTTTGTTCTGGTGGGGCTGGCATGGATAGATCGAAGTCTCCGAGGAAGGTGTTTGGTGGTGGTGTTGGGGAGAAGGAGAAGAAGGAGAGAGTGAGATTAAGCAGTAGTGGTGGTGGGATTGGTAAGGAGGAAGTGCAATCTAGCAAGACTAGTGGTGTTTTGGGTAGGAGCAAGTCTCAGTCTCAGCCTCAGCCTCAGCCGAGCAAGCCTTCACTCAGGATTGAGGTGAAGAATGAGTCCTCTACTAGATTGAGGTCCAACAGTTTGCGGTCCGTCCCTTCCTCGCCGAGTAGTTGCTATTCATTGCCGAGCTCTTTTGAGAGATTTGCCAATGGGGTCAGGCAGCATCAGGCAAAGGTTGGTCCTAAGGTGGGAGGGCTGGAGACAGGAAAGGCTGTTCATAGAGCTAATAGTCCGGTTGGGAAGAAAAGCGCAGTGGGAAATCCGATTAGGAATTTGGTGCATGGATTTGAAATGGGGGCTAAGGCTCTAAGGAAAAGCTGGGAAGGGACTGTGGAGGTCAACACTAGAGATTCTTCCAAAACTAGAGTTGCAACCAAGTTTGATCCTAAGCCTGAAGTTAGTACTCCTAGGAGGAGAAGCATTGCATATGAAAAGCTGACATCTAAAGAGGAGGGCAAGATCCAACCACCAACAAGGCTCCCTAAGGAACAACATAAGACCCAAACATCTACAAAGAAGGCTAGTGCTAATGGAACTATGGAGGAACCAGAAAAGTCAAGCAAGCAAAGAATTTCCCTTGGAAAGAAATCAGCGGAAGTTTCTAACAGCGGGCTCCCTGGAAACTTGGTCAAAGTTTCTCTAAGTAATAGAAAAGTGACAGATGCAAGTATTCAATGGGCTTCACTCCCATCATCTATTTCAAAGATTGGAAGGGAAGTAATGAAACACAGAGATTCGGCACAGATGGCAGCAACTGAGGCTATGCAAGAGGCTGCTGCTACAGAGAGTTTATTGCAATGTCTAAGAACATATTCAGAGCTAACTAATTCTGCTAAGGAAGATAACCCACAGCCAGCAGTAGAGCAGTTTCTAACTCTTTATGCCAGCCTGAATAATACCCGGACAATTGCTGAATCCTTATCAAAACCTGTTCCAGATGGTTCATCTCCAGATTATGAGAAGAGCACGGTGGAAGAAGCCCTAAAAGTAAAATCAGATAGACAAAAACAAGCGGCTTCCTGGGTCCATGCAGCCTTGGCCACCAATCTGTCATCCTTTGCTGTTTTTACAAGAGACTCTCAATCATCCAAGTGTACAACTTCAAGCAATTCTCAAAACCAAAAGACTGTCGTGGGAAGTCAACTCACATTAGTCCTACACAGTTCCAGTGAAGATGCATCATCGAAAGTTCATGCAAAAACTCGTCTGACAGCTAATTCCAAGTATGCTTCCTCACAAGGAACTCATCGTAAATCAGTTGATGGGTTATCAAATGGGCAGAAGCAGCTGGTCCAACCCCCCTCAGAATGGGTTAGAGGAAATGGCCTCAATGAGGTAGTTAATTTGGTTGAAATGTTGCAATTACAGTCGAGAGTCTGGTTTTTGGGATTTGTTGAGAGGTTCTTGGACAGTGATGGGGACACTACCTTGTCAGATAATGACCAAATAGCAGGTATGCTCACTCAACTAAAGAGTGTTAACGATTGGTTAGATGAGATAGGATCGAGCAAGGATGATGGAGAATCGTGCCAGATATCAGCAGAGACATGTGACAGGTTGAGGAAGAAGATATATGAGTATCTTCTTACACATGTAGAATCTGCTGCTGCTGCACTCAGTGGTGGATCACAATTGGCGCCGCTGAACCAAACAACACAGATTAAAGCCAAACGGTGA 2265 0.4583 MANLVPGVLLKLLQHMNTDVKVGGEHRSSLLQVVSIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQFVFVDRLEGASPVPILRGVRPVPGRHPCVGTPEDIVATHSLAFLDNGKDKNGVCSGGAGMDRSKSPRKVFGGGVGEKEKKERVRLSSSGGGIGKEEVQSSKTSGVLGRSKSQSQPQPQPSKPSLRIEVKNESSTRLRSNSLRSVPSSPSSCYSLPSSFERFANGVRQHQAKVGPKVGGLETGKAVHRANSPVGKKSAVGNPIRNLVHGFEMGAKALRKSWEGTVEVNTRDSSKTRVATKFDPKPEVSTPRRRSIAYEKLTSKEEGKIQPPTRLPKEQHKTQTSTKKASANGTMEEPEKSSKQRISLGKKSAEVSNSGLPGNLVKVSLSNRKVTDASIQWASLPSSISKIGREVMKHRDSAQMAATEAMQEAAATESLLQCLRTYSELTNSAKEDNPQPAVEQFLTLYASLNNTRTIAESLSKPVPDGSSPDYEKSTVEEALKVKSDRQKQAASWVHAALATNLSSFAVFTRDSQSSKCTTSSNSQNQKTVVGSQLTLVLHSSSEDASSKVHAKTRLTANSKYASSQGTHRKSVDGLSNGQKQLVQPPSEWVRGNGLNEVVNLVEMLQLQSRVWFLGFVERFLDSDGDTTLSDNDQIAGMLTQLKSVNDWLDEIGSSKDDGESCQISAETCDRLRKKIYEYLLTHVESAAAALSGGSQLAPLNQTTQIKAKR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00314 754 MobiDBLite consensus disorder prediction 589 631 - -
Cca10g00314 754 MobiDBLite consensus disorder prediction 175 232 - -
Cca10g00314 754 PANTHER DUF936 FAMILY PROTEIN 1 753 - -
Cca10g00314 754 PANTHER EXPRESSED PROTEIN 1 753 IPR010341 -
Cca10g00314 754 MobiDBLite consensus disorder prediction 316 404 - -
Cca10g00314 754 MobiDBLite consensus disorder prediction 389 404 - -
Cca10g00314 754 Pfam Plant protein of unknown function (DUF936) 4 735 IPR010341 -
Cca10g00314 754 MobiDBLite consensus disorder prediction 154 168 - -
Cca10g00314 754 MobiDBLite consensus disorder prediction 316 365 - -
Cca10g00314 754 MobiDBLite consensus disorder prediction 137 232 - -
Cca10g00314 754 MobiDBLite consensus disorder prediction 595 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00314 Cca-Chr10 3349262 3354104 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00314 - - gmx:100817734 1177.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00314 10 3349262 3354104 Cca10g00314 10 3349262 3354104 ECH
Cca10g00314 10 3349262 3354104 Cca04g00513 04 5004414 5009642 PCT