Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00310 ATGGCGAACCCTTCTGGGAACCATCAAGAGCACACGCACGTTTCGTCTTCTGCTCCCGAAACTTCCGGTGCTGCTCTCGCCATGAAGCACAACCCTGGCATATCCCTCGATTGGACCGCTGAAGAACAAGCCATTCTCGAAGATGGACTCTCCAAGTATGCCGCGGAATCCAACATAGTACGCTATGCAAAGATAGCCCTACTGTTACAGCAAAAAACAGTTCGTGATGTAGCACTGCGAGTCAGGTGGATGAATAAGAAAGAGAATAGCAAGAGAAGGAAGGATGAACATAATTTGACTCGAAAAAGTAAAGATAAAAAGGAAAGGGTTTCAGATCCTGCAGTAAAGTCATCTAACTTTGCTGCTCGGTCTAATGTCTCCCCATATGCTCCACCAATGATTACGATGGACAATGATGACGGTATCTCTTATACAGCAATTGGAGGCCCCACCGGTGAGCTATTAGAGCAAAATGCACAGGCCTTGAACCAAATCTCCACAAATCTTTCTGCTTTCCAGGTACAGGAGAATATCAATCTTTTCTGCCAAACTAGAGACAACATCCTTAAAATTATGAATGACTTGAATGACTCGCCAGAGGTGATGAAGCAAATGCCACCACTTCCTGTGAAGGACAATAACTGCCAAATGCCAATCAAGGTCTTGGGAAGAATTTTCATCATCTTTAATTCATTTCAGTTTATCGAGTTGAAGATGGTCATAGCCAACGGTACCAACGGCTTATTATCTATTTTAGTGATTATAGTTTTGATTATCCCAGAAGTTGCAGCACAAGCACTTTCAACGGGTGATTCTGTGGCAGATAATGTGTCAGAAGCCATTAGACAACCGGATAATACTATTAGAGTGGATCCTCTAGACAATTTCGAAAAATACAGAGGAGGATTTAACATCACCAACAAGCATTATTGGAGTTCGGTGATCTTCACTGGAGTATATGGATATGCAATTGGGATGTTCTGCCTTTTGTGTGGAATTGTATATGGAAGTCTTTTGATAATAACCATCGTTTATGGCAAAAATGACAGAGGAAGAAGGATGAAGAAGGTCTTTCCTTGTAATTACAAGAGTTTTGATCTTACACTGATTCCTTTGGCTATATTGCTCACCACTTTTGCTATAGCTACAAGTGGACTAGTTTTTGCTGGGAGTGCAAGGTTCCATTCTGAAGCGAAAACTTCAGTTAATATCATAATCCAGACAGCGAATGAGGCATCAGAAACGATACACAACACAACAGGAGCGTTAAAGGGCATGGAAAGTAACTTTATGGAAGCCAATGTCAGTTCTGAGGGTTCTGTAATTCTTGACTCAACAACTGAGAGACTTGATGATGCATCTGCAAACATAGAAAAGCAAGCTAGGAAAAATAGGCGCCTTATTGACAAGGGCTTGAAACTAGTGTTTGTAATTACCACCGTGATCATAAGCTTGAACTTGGTTGCTGTAATAGCTTTGACAGTTTCTGGAGTACTGAGGTTACCGCGGGCACTATACATGCTTCTTGTATTGTGCTGGTTGATGACAGTGATATGCTGGATATTCTTTGGAGTCTATTTCTTCTTAGAAAAATTTTCTAGTGATGCATGCACAGCTCTTAACAACTTTCAAGAAAATCCCTATAACAACAGCCTAAGCTCAATCCTCCCCTGTGATGAATTGCTCTCGGCAAAATCAGTTCTATCTGATGTTAGTGCTGGGATTTACGATCTTGTTAATAAGGTGAATGCAAACATATCAACCCTGCAGGCAACATCTGATGTTAATCTTGTTCATGTTTGCAACCCCTTCTCAGCTCCACCCAACTACTTATACCAGCCAGAGAATTGCCCTGCTAACACCATCCGAATAGGAGATATTCCAAAGGTATTGAAGCCTTTCACGTGTTCAGATGCCATTGATGGAACATGTGACAATGGATATCTACCCGGCAGGGAATACGTGAGAGTTGAGGCTTACACAAGTTCAATTCAGGACCTGTTGAACGTGTATCCCAGTATGGAACACTTGTTAGAATGCCAAGTGGTGAAAGATGCATTCTCTCAAGTACTTCTCAACCACTGCAAGCCTTTGAAGAAATATGCTAGGATGGTATGGATAGGAATGCTGTTTCTTGCAGTGATTATGTTGTTGTTGGTTGTGCTATGGACAATGAAAGCACATCACGAACAACGTTATCATCTTTCAGATGGTTCTGTGGACCCACATTTTGCTCCAAACAAAGCCTTGGAAGCAAGACCAGCTAAAGAGATTGAGATTTGA 2283 0.4166 MANPSGNHQEHTHVSSSAPETSGAALAMKHNPGISLDWTAEEQAILEDGLSKYAAESNIVRYAKIALLLQQKTVRDVALRVRWMNKKENSKRRKDEHNLTRKSKDKKERVSDPAVKSSNFAARSNVSPYAPPMITMDNDDGISYTAIGGPTGELLEQNAQALNQISTNLSAFQVQENINLFCQTRDNILKIMNDLNDSPEVMKQMPPLPVKDNNCQMPIKVLGRIFIIFNSFQFIELKMVIANGTNGLLSILVIIVLIIPEVAAQALSTGDSVADNVSEAIRQPDNTIRVDPLDNFEKYRGGFNITNKHYWSSVIFTGVYGYAIGMFCLLCGIVYGSLLIITIVYGKNDRGRRMKKVFPCNYKSFDLTLIPLAILLTTFAIATSGLVFAGSARFHSEAKTSVNIIIQTANEASETIHNTTGALKGMESNFMEANVSSEGSVILDSTTERLDDASANIEKQARKNRRLIDKGLKLVFVITTVIISLNLVAVIALTVSGVLRLPRALYMLLVLCWLMTVICWIFFGVYFFLEKFSSDACTALNNFQENPYNNSLSSILPCDELLSAKSVLSDVSAGIYDLVNKVNANISTLQATSDVNLVHVCNPFSAPPNYLYQPENCPANTIRIGDIPKVLKPFTCSDAIDGTCDNGYLPGREYVRVEAYTSSIQDLLNVYPSMEHLLECQVVKDAFSQVLLNHCKPLKKYARMVWIGMLFLAVIMLLLVVLWTMKAHHEQRYHLSDGSVDPHFAPNKALEARPAKEIEI 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00310 760 Pfam Protein of unknown function (DUF3755) 171 204 IPR022228 -
Cca10g00310 760 CDD SANT 38 87 IPR001005 -
Cca10g00310 760 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 252 755 IPR040283 -
Cca10g00310 760 Gene3D - 38 112 - -
Cca10g00310 760 MobiDBLite consensus disorder prediction 1 22 - -
Cca10g00310 760 Coils Coil 443 470 - -
Cca10g00310 760 MobiDBLite consensus disorder prediction 88 113 - -
Cca10g00310 760 MobiDBLite consensus disorder prediction 1 23 - -
Cca10g00310 760 MobiDBLite consensus disorder prediction 88 118 - -
Cca10g00310 760 PANTHER OS11G0264500 PROTEIN 252 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00310 Cca-Chr10 3288880 3303735 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00310 - - gmx:100805495 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00310 10 3288880 3303735 Cca04g00511 04 4980485 4986439 PCT