Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00305 ATGTGCCTTATACGTTTGATGGGAATTTCTATTTTTCCTTTGTCAAGGTTACTCAAGGGTCGTAGCATGCCTGGTAAAATATTATTGAGCCAGAGGGTTGAACCTCCAGATAACTCAAACTTAGCCTCACCAACTTATATAAGGAACTCCTCATTCGGTGATACCGGCACGAGTAATCGCACAACTGAGACCGTAGAGGAGGAAGTTCACAGTACAAGTAAACAATTTCATACTCCCAATGAGAATAAGTTAAAAGTATCAGCGTCCAATGTAGAGAGTGCATCTGAAGAAGTCCGGAAATCTTCCATGGGTGCTAGAGCTACAGATTCTGCTAGAGTTATGAAGTTCACTAAGGTGCTTTCTGGGACGATGGTTGTATTAGAGAAATTGCGAGAATTATCCTGGAGTGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGTTACGCACCACCTAACTCGGATAGAAGGGAGGGGGTTTTGAGTAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATTCAGAACGCTCAGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTACCTGATGTGTCATTCTTTCAACAACAGCAAGTTCAGAAATCACTGGAGCGTATTCTTTACACATGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTGTCAGAATACTTAGAAGGGAGCATAGATAATTGGTCGATGTCTGATTTATCTTCAGATAAAATCTCTAATGTAGAAGCTGACTGTTATTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGATCATTATACCTTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTCAAGGAATTGGTGACAAGGATAGACGAACCTGTTTCAAGCCATATGGAGGAGCAAGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGTGAGATACCCTTCCATCTTGTCACGCGTCTTTGGGACACGTATCTAGCCGAAGGAGATGCCTTACCAGACTTCCTTGTATATATATTTGCCAGTTTTCTTCTAACGTGGTCAGACAAGCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCAACTAAGAACTGGAGTCACCAGGAGCTAGAGATGGTACTTTCTCGTGCATTTATGTGGCACAGCTTGTTCAACAACTCCCCCAGCCATTTAGCTAAATGA 1305 0.4215 MCLIRLMGISIFPLSRLLKGRSMPGKILLSQRVEPPDNSNLASPTYIRNSSFGDTGTSNRTTETVEEEVHSTSKQFHTPNENKLKVSASNVESASEEVRKSSMGARATDSARVMKFTKVLSGTMVVLEKLRELSWSGVPDYMRPTVWRLLLGYAPPNSDRREGVLSRKRLEYLDCVSQYYDIPDSERSDDEINMLRQIAVDCPRTVPDVSFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGSIDNWSMSDLSSDKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKFKELVTRIDEPVSSHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQELVMFLQHLPTKNWSHQELEMVLSRAFMWHSLFNNSPSHLAK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00305 434 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 300 423 IPR035969 -
Cca10g00305 434 MobiDBLite consensus disorder prediction 33 62 - -
Cca10g00305 434 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 16 431 - -
Cca10g00305 434 Gene3D - 114 165 - -
Cca10g00305 434 ProSiteProfiles TBC/rab GAP domain profile. 137 364 IPR000195 -
Cca10g00305 434 SMART tbc_4 134 390 IPR000195 -
Cca10g00305 434 Pfam Rab-GTPase-TBC domain 141 385 IPR000195 -
Cca10g00305 434 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 16 431 - -
Cca10g00305 434 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 173 298 - -
Cca10g00305 434 MobiDBLite consensus disorder prediction 33 60 - -
Cca10g00305 434 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 114 324 IPR035969 -
Cca10g00305 434 Gene3D - 299 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00305 Cca-Chr10 3227828 3234375 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00305 K20360 - gmx:100785695 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00305 10 3227828 3234375 Cca04g00504 04 4925802 4932214 PCT