Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00504 ATGAACAAGCGGCAACAAGATGAGCGAAACATAGCTACCCTCGACTCCAGATTCAATCAGACGCTCAGAAATGTTCAAGGGTTACTCCAAGGTCGAAGCATGCCCGGTAAAATATTATTGAGCCGTAGGTCAGACCCTCCAGATAACTCAAACTCAAAGATATCCTCACCAGATTACAGAAGGAGCTTTTCCCACAATGATGCTGGCACAAGTAATCACACATCTGGGGCAGTAGAGGAGGAATTTCAGAGTACAAGCAAACCAATTAGTACTGCCAATGTCAGTAGGCTAAAATTGTCAACCTCCTTTGGGGGAAGCCCGCCTGAGGAAATCCGCAAGTCTACCATGGGTGCTAGAGCTACAGATTCTGCTAGAGTTATGAAGTTCACTACGGTGCTTTCAGGGACAGTGGTTATATTAGACAAGTTGCGTGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTAAAGTGTGGAGACTTCTGTTGGGATATGCACCAACTAATTCAGATAGAAGGGAAGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTATGTTTCTCAATATTATGATATTCCTGATACAGAACGTTCAGATGATGAGGTCAACATGCTTCATCAGATTGCCGTTGATTGTCCCAGAACTGTACCTGAGGTTCCATTCTTCCAGCAACTGCATGTTCAGAAATCATTGGAACGCATTCTTTATGCATGGGCCATTCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTTTGGTTGTTTTCTTGTCAGAACATTTAGAAGGGGGTATAGATAATTGGTCAATGTCTGATTTATCTTCAGATATAATCTCTAATATAGAGGCTGACTGCTACTGGTGCTTGTCAAAATTGCTTGATGGTATGCAAGACCATTACACATTTGCTCAACCTGGAATTCAGAGGCTTGTTTTCAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTTGCAACACGTGGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTTTAATCCGTGAGATACCATTCCATCTAGTCACACGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTAGTATATATATCTGCCAGCTTCTTTCTAACAGTGAGTAAGCTTACCCTGGCGTTTTCATATAATCTATCTGAATTAGATTTCATGTTGTAG 1242 0.4251 MNKRQQDERNIATLDSRFNQTLRNVQGLLQGRSMPGKILLSRRSDPPDNSNSKISSPDYRRSFSHNDAGTSNHTSGAVEEEFQSTSKPISTANVSRLKLSTSFGGSPPEEIRKSTMGARATDSARVMKFTTVLSGTVVILDKLRELAWSGVPDNMRPKVWRLLLGYAPTNSDRREGVLRRKRLEYLDYVSQYYDIPDTERSDDEVNMLHQIAVDCPRTVPEVPFFQQLHVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEHLEGGIDNWSMSDLSSDIISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVLQHVEDQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYISASFFLTVSKLTLAFSYNLSELDFML 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00504 413 Gene3D - 312 411 - -
Cca04g00504 413 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 4 404 - -
Cca04g00504 413 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 4 404 - -
Cca04g00504 413 Pfam Rab-GTPase-TBC domain 153 394 IPR000195 -
Cca04g00504 413 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 186 311 - -
Cca04g00504 413 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 313 397 IPR035969 -
Cca04g00504 413 Gene3D - 127 178 - -
Cca04g00504 413 MobiDBLite consensus disorder prediction 44 89 - -
Cca04g00504 413 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 127 337 IPR035969 -
Cca04g00504 413 SMART tbc_4 147 403 IPR000195 -
Cca04g00504 413 MobiDBLite consensus disorder prediction 29 89 - -
Cca04g00504 413 ProSiteProfiles TBC/rab GAP domain profile. 150 377 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00504 Cca-Chr4 4925802 4932214 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00504 K20360 - gmx:100819281 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00305 10 3227828 3234375 Cca04g00504 04 4925802 4932214 PCT