Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00301 ATGGGATACAAATTACTATGCGTTCTTGTAGCAGTGACCTTTGTTATGATAACAAAGGTGCCAAAAAATGTGAGTGCTCAAAATTGTGGGTGTGCTGAAGGGTTATGTTGCAGTCAATATGGGTATTGTGGCACCGGTGACGCATATTGTGGCACAGGATGCCAACAGGGTCCTTGTTATAACCCTCCAAGTTCCTCTAACAATGTTAATGTGGCTGACATTGTCACACCACAATTCTTCAATGGCATAATTGATCAGGCTGACTCTGGTTGTGCTGGCAAGAACTTTTACTCACGAGATGCTTTCATTAATGCTCTCAGTTCCTATGACCAGTTTGGTAGAATTGGTTCTGAGGATGACTCCAAACGCGAGATTGCAGCTGCTTTTGCCCATTTCACTCATGAAACTGGACATTTTTGTTACATTGAAGAGATTGATGGTGCATCAAAGGACTATTGTGATGAAGACAATACACAATATCCATGTGTTCCTAACAAAGGCTACTATGGGCGTGGTCCGATCCAACTATCTTGGAACTTCAACTATGGACCAGCAGGACAAAGCAATGGATTTGATGGATTGAACTCTCCTGAAACAGTGGCGAATGATCCTGTGGTGTCTTTCAAGACAGCATTATGGTACTGGATGCAACATGTGCGCCCTGTCATTAACCAAGGTTTTGGTGCAACCATAAGAGCCATTAATGGTCAACTTGAATGTGATGGTGCCAACCCCACCACGGTTCAGGCTCGTGTTAATTACTACACTGAGTATTGTAGACAATTGGGTGTTGCTACTGGTGATAATCTTACTTGCTGA 819 0.431 MGYKLLCVLVAVTFVMITKVPKNVSAQNCGCAEGLCCSQYGYCGTGDAYCGTGCQQGPCYNPPSSSNNVNVADIVTPQFFNGIIDQADSGCAGKNFYSRDAFINALSSYDQFGRIGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEDNTQYPCVPNKGYYGRGPIQLSWNFNYGPAGQSNGFDGLNSPETVANDPVVSFKTALWYWMQHVRPVINQGFGATIRAINGQLECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00301 272 SUPERFAMILY Lysozyme-like 70 272 IPR023346 -
Cca10g00301 272 PIRSF Endochitinase 2 272 IPR016283 GO:0004568|GO:0005975
Cca10g00301 272 PANTHER ENDOCHITINASE EP3-LIKE 6 272 - -
Cca10g00301 272 ProSiteProfiles Chitin-binding type-1 domain profile. 26 61 IPR001002 GO:0008061
Cca10g00301 272 ProSitePatterns Chitinases family 19 signature 2. 206 216 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca10g00301 272 PRINTS Chitin-binding domain signature 29 37 IPR001002 GO:0008061
Cca10g00301 272 PRINTS Chitin-binding domain signature 37 44 IPR001002 GO:0008061
Cca10g00301 272 PRINTS Chitin-binding domain signature 44 51 IPR001002 GO:0008061
Cca10g00301 272 PANTHER CHITINASE-RELATED 6 272 - -
Cca10g00301 272 CDD ChtBD1 31 55 - -
Cca10g00301 272 Gene3D - 23 71 IPR036861 GO:0008061
Cca10g00301 272 Gene3D Endochitinase, domain 2 143 200 - -
Cca10g00301 272 Pfam Chitin recognition protein 26 59 IPR001002 GO:0008061
Cca10g00301 272 ProSitePatterns Chitin recognition or binding domain signature. 31 50 IPR018371 GO:0008061
Cca10g00301 272 SUPERFAMILY Plant lectins/antimicrobial peptides 24 63 IPR036861 GO:0008061
Cca10g00301 272 CDD chitinase_GH19 75 272 - -
Cca10g00301 272 SMART ChitinBD_3 28 59 IPR001002 GO:0008061
Cca10g00301 272 ProSitePatterns Chitinases family 19 signature 1. 91 113 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca10g00301 272 Pfam Chitinase class I 225 272 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca10g00301 272 Pfam Chitinase class I 74 218 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca10g00301 272 Gene3D - 72 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00301 Cca-Chr10 3220037 3221045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00301 12 272 Glycoside Hydrolase AT3G54420 73.282 1.68e-144 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00301 K01183 - gmx:100776582 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00301 10 3220037 3221045 Cca04g00500 04 4907937 4909071 PCT