Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00500 ATGAGGAAGATAGTAAACATTCCCGTTTCAGGATTATGGGTGGCAATTACCCTTGTGATGGTGAGTGGGCAAGGCATAAGTGACATCGTGACAGCAGAATTCTTTGACAGCATAATCAATCAAGCTGACGATAGTTGTGAAGGGAAGAACTTCTACTCACGTGATGCTTTCCTCGATGCTCACAATTCCTACCCTCAGTTTGGAACAAATGGCAACCAGGACGACAACAAGCGTGAGGTTGCAGCTGCCTTTGCCCATTTCACCCATGAAACTGGACACTTTTGCTACATAGAAGAGATTGATGGTGCATCAAGGGACTATTGTGATGAAACGAACACCCAGTACCCATGTAACCCTGACAAAGGGTACTACGGGCGTGGACCCATTCAACTATCATGGAACTTCAACTATGGACCAGCTGGGGAGAGTAACGATTTTGATGGATTGAATGCTCCAGAGACAGTAGCCAACGACCCTGTGGTGTCCTTCAAGACAGCATTGTGGTATTGGACACAGTTTGTGAGACCTGTGTTGGATCAAGGTTTTGGTGCAACCATTAGAGCTATCAATGGCCAACTTGAATGTGATGGTGCAAACCCTGATACTGTTCAAGCTCGTGTTAATTACTACACTCAGTATTGTTCACAACTTGGTGTCGATCCTGGTGATAACCTCGATTGCTAA 684 0.4547 MRKIVNIPVSGLWVAITLVMVSGQGISDIVTAEFFDSIINQADDSCEGKNFYSRDAFLDAHNSYPQFGTNGNQDDNKREVAAAFAHFTHETGHFCYIEEIDGASRDYCDETNTQYPCNPDKGYYGRGPIQLSWNFNYGPAGESNDFDGLNAPETVANDPVVSFKTALWYWTQFVRPVLDQGFGATIRAINGQLECDGANPDTVQARVNYYTQYCSQLGVDPGDNLDC 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00500 227 CDD chitinase_GH19 30 227 - -
Cca04g00500 227 Gene3D - 25 227 - -
Cca04g00500 227 PANTHER CHITINASE-RELATED 23 227 - -
Cca04g00500 227 SUPERFAMILY Lysozyme-like 26 227 IPR023346 -
Cca04g00500 227 PIRSF Endochitinase 4 227 IPR016283 GO:0004568|GO:0005975
Cca04g00500 227 Pfam Chitinase class I 29 171 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca04g00500 227 Pfam Chitinase class I 180 227 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca04g00500 227 ProSitePatterns Chitinases family 19 signature 1. 46 68 IPR000726 GO:0004568|GO:0006032|GO:0016998
Cca04g00500 227 Gene3D Endochitinase, domain 2 98 155 - -
Cca04g00500 227 PANTHER ENDOCHITINASE EP3-LIKE 23 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00500 Cca-Chr4 4907937 4909071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00500 23 227 Glycoside Hydrolase AT3G54420 74.634 1.47e-115 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00500 K01183 - gmx:100527091 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00500 04 4907937 4909071 Cca04g00500 04 4907937 4909071 ECH
Cca10g00301 10 3220037 3221045 Cca04g00500 04 4907937 4909071 PCT