Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00225 ATGCTGGATTGTGCTAATCCCCATGACAAAAGCACCTCAGAAGTTTCTAGCTTCATACTTGAGGATGTTCCTCATCTATCTGATTACATCCCTGACCTCCCTACATATCCTGACCCGTTACAAAACAATCCTTCCTATTCAGTTGTTGCGCAATACTACGTGAATGTGGATGATACAGTTGCGCAACAGATAGTTGTACACAAAAATAGTCCAAGAGGAACACATTTTCGGCGTGCTGGACCTGCTCAGAAGGTATATTTTGATTCAGAGGAAGTATACGCTTGTATTGTCACATGCGGTGGTCTTTGTCCTGGTCTAAATACAGTGATAAGAGAAATAGTGTGTGGCTTGTATCATATGTATGGAGTGCACAAAGTTCTGGGAATACAGGGAGGTTATCCAGGTTTTTATTCTCGAAATACAGTTCCTTTAACACCAAAGGTTGTGAACGATATCCACAAACGTGGTGGAACCATCCTTGGGACATCATATGGAGGCCATGACACCTCAAAGATTGTTGATAGCATTGAGGACCGGGGCATTAATCAGGTTTATATACTTGGAGGATTTGGAACTCAAATGGAGGCAGCAATGATTTTTGAGGAAGTTAGAAGGCGTGGCTTGAAAGTTGCAGTGGTCGGAATTCCAAAAACTATTGACAATGATATCCCAGTTATTGACAAGTCAATCGGTTTCGACACTGCTGTTGAAGAGGCACAGAGAGCTATTAATTCTGCTCACGTAGAAGCGGAAAGCGCTGAGAATGGTATTGGTGTTGTAAAATTAATGGGGCGTTACAGTGGATTTATAGCCATGTATGCAACTCTTGCTAGCCGAGATGTGGACTGTTGCTTGATTCCAGAATCACCATTTTACCTGGAGGGTCCAGGAGGACTGTTGGAGTTCGTTGAGAAAAGACTGAAAGAACAAGGGCACATGGTTATAGTAATAGCTGAAGGTGCATGTCAAGAGCTTCTTTCTGGCAACCCATCTATTGCTTATAAGCAGGGTGCTTCTGCCGATATATTACTTCCCGACGTTGGCCTGTGGTTATCCCAGAAAATTAAGGATCATTTTGCAAAACGTCAAAAAATGGCTATAAATCTGAAGTACATTGATCCTACTTACATGATCCGTGCTATCCCAAGCAATGCATCTGATAATGTATTCTGCACCCTCCTAGCCCAAAGTGCTGTTCATGGTGCAATGGCAGGATACACAGGCTTCACTGTAGGCCCAGTTAATGGCAGAAATTGTTACATTCCATTTCATCTGATAAACGAGGGAGAGAAGAGGGTTGTGATAACTGATCGGATGTGGGCAAGGTTGCTTTCTTCAACCCATCAGCCTAGCTTCTTGAATCCAAAAGATATCACAGGAGAAAGAGAGGAACACCAAACCTCAGACGGGCAGAACCAGCCAGAAATTGCAGACTAA 1437 0.4315 MLDCANPHDKSTSEVSSFILEDVPHLSDYIPDLPTYPDPLQNNPSYSVVAQYYVNVDDTVAQQIVVHKNSPRGTHFRRAGPAQKVYFDSEEVYACIVTCGGLCPGLNTVIREIVCGLYHMYGVHKVLGIQGGYPGFYSRNTVPLTPKVVNDIHKRGGTILGTSYGGHDTSKIVDSIEDRGINQVYILGGFGTQMEAAMIFEEVRRRGLKVAVVGIPKTIDNDIPVIDKSIGFDTAVEEAQRAINSAHVEAESAENGIGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGPGGLLEFVEKRLKEQGHMVIVIAEGACQELLSGNPSIAYKQGASADILLPDVGLWLSQKIKDHFAKRQKMAINLKYIDPTYMIRAIPSNASDNVFCTLLAQSAVHGAMAGYTGFTVGPVNGRNCYIPFHLINEGEKRVVITDRMWARLLSSTHQPSFLNPKDITGEREEHQTSDGQNQPEIAD 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00225 478 Coils Coil 236 256 - -
Cca10g00225 478 Hamap ATP-dependent 6-phosphofructokinase [pfkA]. 23 453 IPR012004 GO:0003872|GO:0005524|GO:0006096
Cca10g00225 478 SUPERFAMILY Phosphofructokinase 27 456 IPR035966 GO:0003872|GO:0006096
Cca10g00225 478 Pfam Phosphofructokinase 95 400 IPR000023 GO:0003872|GO:0006096
Cca10g00225 478 PIRSF ATP_PFK_TP0108 16 457 IPR012004 GO:0003872|GO:0005524|GO:0006096
Cca10g00225 478 Gene3D - 88 278 - -
Cca10g00225 478 PRINTS ATP-dependent phosphofructokinase family signature 96 115 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca10g00225 478 PRINTS ATP-dependent phosphofructokinase family signature 180 196 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca10g00225 478 PRINTS ATP-dependent phosphofructokinase family signature 213 230 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca10g00225 478 PRINTS ATP-dependent phosphofructokinase family signature 231 249 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca10g00225 478 PRINTS ATP-dependent phosphofructokinase family signature 252 268 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca10g00225 478 PRINTS ATP-dependent phosphofructokinase family signature 309 321 IPR022953 GO:0003872|GO:0006002|GO:0006096
Cca10g00225 478 PANTHER - 13 468 - -
Cca10g00225 478 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 13 468 - -
Cca10g00225 478 MobiDBLite consensus disorder prediction 451 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00225 Cca-Chr10 2394853 2399419 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00225 K00850 - gmx:100796769 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00225 10 2394853 2399419 Cca11g00274 11 3429946 3434153 PCT