Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00213 ATGGATTTCCGTGCGCCGCCGCCATCTCCCGTCGCCTCTGCGCGGCGCTCGTCGCTCCCCGACGACGACGTTTTCCGCCAATTCTTGGACACCTCGCTCCGTCTCCCAACCATTAACGACCACCGACAACCACCGCCTCCCAAGGTTGACTTTCGATATTTGTGTTCCGACAACGCTCTCCGACATGTCGTTTCGGAATCTTTGGCCACTGTCGGATGCTTTCAGCTGATCAACCATGGGATTCCACTGGACTTGATCGCATCGACCGCGGAAGACGCCGTCGGAATCTTCCAGATGCCGCCGGAGAAGCGAGCATCCGCCGCGAGGTCGCCGGAGAGTCCTTGCGGGTTCGAGGAACAGGATTCAGAGGAGAATGAGTTAAGCCAAGAGTTCGTGTGGGGTACAGATATCGACTTCAACATCAAAATGGAGACTCTTTTTCCCGTTGGATATTCAAACTTTAGTAAGAAGATGGACACTCTTCAGTCGAGGATAGAAAAGGTTGCGGAGATAATTTTGACAGTGATAATCAAAGATTCTCCCAAAAAATTTGCAAATTGTGTTGAGATGATTGGTGGGCATGAACGTGGGACACTTTGTTGTGTTTATAAGCACAATCCAGCTAATACGCAAAGCCAATGGACAAACTCTTTAAGGTACGATGTGATTAGGATGTTGGTCAGGGGAAACGATTACTCTCATTCATTGTGCTTGCATGTATGTCATGATGCTTTAGACTTTCAACTTTACTCCAAGAAAGGTTGGCTCTCTTTCTCCCCAGAAAAAAGAGCCCTAGTAATCACCGGAGGGGACCAAGCTCAGATTTTGAGCGACGGGCACTACAAGCATGTGATTGGAAGGCCAATATTTAAGGGTGAGAAAGGGGACTTCATTTCAATGGCTTTCCTCTATTCTCCACCAAACAGCAAGAACAATTATGAAACCAGTGGGGAAAGAACTATTTCCCTAGCCTTGCAAGCCATGTTAGCTATGATTCTGACCATTGTCTATCATGTCCTGATTTATGTCTACAAAAAAATTTGA 1044 0.4741 MDFRAPPPSPVASARRSSLPDDDVFRQFLDTSLRLPTINDHRQPPPPKVDFRYLCSDNALRHVVSESLATVGCFQLINHGIPLDLIASTAEDAVGIFQMPPEKRASAARSPESPCGFEEQDSEENELSQEFVWGTDIDFNIKMETLFPVGYSNFSKKMDTLQSRIEKVAEIILTVIIKDSPKKFANCVEMIGGHERGTLCCVYKHNPANTQSQWTNSLRYDVIRMLVRGNDYSHSLCLHVCHDALDFQLYSKKGWLSFSPEKRALVITGGDQAQILSDGHYKHVIGRPIFKGEKGDFISMAFLYSPPNSKNNYETSGERTISLALQAMLAMILTIVYHVLIYVYKKI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00213 347 PANTHER - 2 347 - -
Cca10g00213 347 Pfam non-haem dioxygenase in morphine synthesis N-terminal 49 127 IPR026992 -
Cca10g00213 347 SUPERFAMILY Clavaminate synthase-like 34 310 - -
Cca10g00213 347 Gene3D - 21 320 IPR027443 -
Cca10g00213 347 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 2 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00213 Cca-Chr10 2229031 2231659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00213 - - pvu:PHAVU_005G166600g 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00213 10 2229031 2231659 Cca10g00213 10 2229031 2231659 ECH
Cca10g00213 10 2229031 2231659 Cca11g00257 11 3118911 3121494 PCT