Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00192 ATGAGAATGGAGAAGGAGGTGGAGCTTGGTTCCCTTGAAATGGCAACCCAACACATTTCACGAGCAGAGAGGCGCAAGGGTGGACTTGTTACCATGCCTTTCATCATTGCAAATGAGGCACTTGCGAGGGTGGCTAGCTTGGGCCTTTTGCCCAACATGATACTCTATTTGATGGGAAGCTACAGGCTTCACTTAGCCAAAGCTACCCAGATACTCCTCTTGTCCTCTGCTAGTGCCAATTTCACTCCTGTGGTGGCTGCTTTCATTGCTGATTCTTATCTCGGTCGATTCCTCGCTGTTGGGTTAGGATCTGCCATCAGTTTTCTGGGAATGGCACTGCTGTGGTTAACAGCTATGATCCCAAAGGCACGGCCTCCAAATTGCAACCAAGGGACTGAAAGCTGTAAATCGGCAACAGGGGGACAAATGGCAATCTTGCTCTCTTCCCTTGCTCTCATGTCTATTGGAAATGGTGGTCTTTCATGCTCCTTAGCATTTGGTGCAGACCAGGTGAATAGAAAAGATAACCCCAATAACCTCAGGGTCTTGGAAACATTCTTCAGCTGGTACTATGCTTCTGCTACTATTTCTGTCATAATTGCCCTCACAGGAATAGTTTACATCCAAGACCATCTTGGATGGAAAGTGGGTTATGGAGTTCCAGCAGCACTTATGCTTTTATCCACTGTCTCCTTCTTCCTTGCCTCTCCACTCTATGTAAAGAATAAAGTACAAACCAGCTTGTTAACTGGATTTGCACAAGTCATTGTTGTGGCCTTCAAGAACAGAAAACTTCCATTACCACCCAAGAACTCTCCTGAACTTTACCATCATAAGGAGGACTCAGATCTTGTGGTTCCATCTGATAAACTAAGGTTTCTTAATAAAGCTTGTGTTATTAAAGATCCTGAAGAAGATATAGGCTCTGATGGTTCAGCATCAAATCCGTGGACTCTCTGCACAGTAGATCAAGTAGAAGAACTAAAAGCCATTATTAAAGTAATTCCCTTGTGGTCTACAGGGATCATGATGTCACTTAGCATTGGAGGCTCATTTGGATTGTTACAAGCAAAATCCTTAAACAGACACATCACCTCACACTTTCAAGTGCCACCTGGCTCTTTCAGTGTAATCATGGTAGTCGCAATATTCGTATGGATAGCTCTGTATGACCGTGTACTTCTTCCTATAGCATCAAAGATAAAAGGCAAACCAGTTAGGATCAATGCAAAGAGAAGAATAGGACTAGGCTTGTTTTTCTCTTTTCTCCACTTGGTAACTGCAGCACTTGTTGAGACAATAAGGCGAAAGAGAGCAATCAAGGAGGGATATCTTAACAATACCCATGCAGTGTTGAACATGTCTGCGTTGTGGCTTGCACCACAACTTTGTTTGGGTGGCATAGCTGAAGCATTCAATGCAATAGGCCAAAATGAGTTTTACTACACAGAGTTTCCTAGGAGCATGTCTAGTGTTGCTGCTTCTCTTTCTGGACTTGGAATGGCTGCAGGAAACTTGGTATCTAGTTTTGTGTTCAGTGCTGTTGAAAACGTTACTTCAAGAGGTGGAAAAGAGGGTTGGGTTTTGGATAACATTAACAAGGGTCGTTATGATAAGTACTATTGGGTTCTAGCTGGTCTGAGTGCACTTAATGTAGTGTATTATCTGATATGTAGTTGGGCTTATGGACCGACCGTTGATCAAGTACGTAACATGGAGGAAGCATCAACTGAAGAAATTGGCAATGAGAAACAGGTTGACAAGGCATGTGAGATTACTGAAGAAATTGGCTCAAAGGAGAAAGAGTTCACTGAATTGCAGAATGGCGAAAAAAGAATTCAAGATTAG 1848 0.4307 MRMEKEVELGSLEMATQHISRAERRKGGLVTMPFIIANEALARVASLGLLPNMILYLMGSYRLHLAKATQILLLSSASANFTPVVAAFIADSYLGRFLAVGLGSAISFLGMALLWLTAMIPKARPPNCNQGTESCKSATGGQMAILLSSLALMSIGNGGLSCSLAFGADQVNRKDNPNNLRVLETFFSWYYASATISVIIALTGIVYIQDHLGWKVGYGVPAALMLLSTVSFFLASPLYVKNKVQTSLLTGFAQVIVVAFKNRKLPLPPKNSPELYHHKEDSDLVVPSDKLRFLNKACVIKDPEEDIGSDGSASNPWTLCTVDQVEELKAIIKVIPLWSTGIMMSLSIGGSFGLLQAKSLNRHITSHFQVPPGSFSVIMVVAIFVWIALYDRVLLPIASKIKGKPVRINAKRRIGLGLFFSFLHLVTAALVETIRRKRAIKEGYLNNTHAVLNMSALWLAPQLCLGGIAEAFNAIGQNEFYYTEFPRSMSSVAASLSGLGMAAGNLVSSFVFSAVENVTSRGGKEGWVLDNINKGRYDKYYWVLAGLSALNVVYYLICSWAYGPTVDQVRNMEEASTEEIGNEKQVDKACEITEEIGSKEKEFTELQNGEKRIQD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00192 615 CDD MFS_NPF1_2 32 562 - -
Cca10g00192 615 PANTHER PEPTIDE/NITRATE TRANSPORTER 16 578 - -
Cca10g00192 615 Pfam POT family 99 528 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca10g00192 615 SUPERFAMILY MFS general substrate transporter 34 559 IPR036259 -
Cca10g00192 615 Gene3D MFS general substrate transporter like domains 3 571 IPR036259 -
Cca10g00192 615 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 16 578 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca10g00192 615 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 86 110 IPR018456 GO:0006857|GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00192 Cca-Chr10 2042403 2045721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00192 18 571 Organic Solute Cotransporters AT1G52190 59.075 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00192 - K14638 gmx:100792940 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00192 10 2042403 2045721 Cca10g00192 10 2042403 2045721 ECH
Cca10g00192 10 2042403 2045721 Cca11g00236 11 2836044 2839508 PCT