Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02834 ATGATAACACTAAGCGACTTGTACCATGTGATGACAGCAATGGTGCCACTCTACGTGGCCATGATCCTGGCGTACGGTTCGGTGAAATGGTGGAAAATATTCTCGGCGGAGCAATGCTCAGGCATAAACCGTTTCGTGGCCCTGTTCGCGGTCCCTCTCCTCTCCTTCCACTTCATCGCCTCCAACAACCCGTACGAAATGAACTTGCGGTTCATCGCGGCCGACACGCTCCAAAAGATCATCGTGCTGGTGGTCCTGACCATCTGGAGCAACGTGAGCAAGAGAGGGTGCCTGGAGTGGACGATAACACTCTTCTCCATCTCGACGCTCCCCAACACGCTGGTCATGGGCATTCCGCTTCTCAAAGGAATGTACGGAGACTTGTCGGGGAGTTTGATGGTCCAAATTGTGGTCCTCCAGTGCATCATCTGGTACACGCTCATGCTCTTCATGTTCGAGTACAGAGCCGCCAGAATGCTCATCTCAGAGCAGTTCCCCGACACTGCCGCCACCATTGTCTCCATCCACGTCGACTCTGACGTCATGTCCCTCGACGGACGCCACCCCTTGGAGACCGAAGCCCAGATTAAAGAGGACGGCAAACTCCACGTCACCGTTCGAAAGTCCAACGCTTCCAGATCCGACATCTTCTCCCGAAGGTCCCAGGGCCTTTCCTCCACCACCCCTCGCCCTTCCAACCTCACCAACGCTGAGATTTACTCTCTTCAGTCCTCCAGAAACCCCACGCCTCGTGGCTCCAGCTTCAACCACACCGACTTCTACTCCATGATGGCTGCCGGACGGAGTTCCAACTTCGGACCCAACGACGTTTATGCCCTCTCCGCCTCCAGGGGCCCCACTCCCAGACCTTCTAATTACGACGACGATTCTTCCAAGCCCAGGTACCACTACCCTGCGCCCAACCCTGGCATCTTCTCTCCCACCGCTTCTAGAAACGCCACCAAGAagcccaacgctccgcccccgccccagccccagcccctccccaAACCTGACGATCCTAATAAAGACCTTCACATGTTCGTTTGGAGCTCCAGTGCTTCCCCCGTTTCTGATGTCTTCGCTGGACATGAATACGATCACAAGGAACTCAAATTAACCGTCTCACCCGGAAAAGGGGAGGGTAATACTAATAATAGAGACGGTACTCAAGAGGAGTACCTAGAGAAAGATGAGTTCAGCTTCGGAAACAGAGGGATCGAGAATAATAATCAGCACGAAGGTGACAAAGTTGGAAACGCAAATCCAAAAACTATGCCTCCAGCCAGTGTAATGACGAGGCTTATATTGATCATGGTGTGGAGGAAACTTATCAGAAACCCCAACACATACTCTAGCCTCATCGGTCTAACTTGGTCACTTGTTTCATTCAGGTGGAACGTTCAAATGCCTGCCATAATTGCAAAGTCTATTTCGATTTTGTCAGATGCAGGGTTGGGCATGGCCATGTTTAGTCTTGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGAAATTCCGTCGCAGCTTTTTCTATGGCCGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGCGTTCTCTTACACGTTGCCATTGTTCAGGCGGCTCTTCCCCAAGGCATTGTCCCCTTTGTCTTTGCCAAGGAATACAATGTACATCCTGATATTCTCAGTACGGGTGTTATTTTTGGGATGTTGATTGCATTGCCCATTACGCTCGTGTACTACATTTTGCTGGGGTTATGA 1782 0.5006 MITLSDLYHVMTAMVPLYVAMILAYGSVKWWKIFSAEQCSGINRFVALFAVPLLSFHFIASNNPYEMNLRFIAADTLQKIIVLVVLTIWSNVSKRGCLEWTITLFSISTLPNTLVMGIPLLKGMYGDLSGSLMVQIVVLQCIIWYTLMLFMFEYRAARMLISEQFPDTAATIVSIHVDSDVMSLDGRHPLETEAQIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGRSSNFGPNDVYALSASRGPTPRPSNYDDDSSKPRYHYPAPNPGIFSPTASRNATKKPNAPPPPQPQPLPKPDDPNKDLHMFVWSSSASPVSDVFAGHEYDHKELKLTVSPGKGEGNTNNRDGTQEEYLEKDEFSFGNRGIENNNQHEGDKVGNANPKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWNVQMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSVAAFSMAVRFLTGPAVMAAASIAVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02834 593 MobiDBLite consensus disorder prediction 213 235 - -
Cca09g02834 593 Pfam Membrane transport protein 9 588 IPR004776 GO:0016021|GO:0055085
Cca09g02834 593 TIGRFAM 2a69: auxin efflux carrier 1 593 IPR014024 -
Cca09g02834 593 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 593 - -
Cca09g02834 593 MobiDBLite consensus disorder prediction 323 338 - -
Cca09g02834 593 MobiDBLite consensus disorder prediction 277 346 - -
Cca09g02834 593 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1A 1 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02834 Cca-Chr9 53906484 53910106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02834 1 584 Organic Solute Cotransporters AT1G73590 69.378 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02834 K13947 - gmx:100786572 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02834 09 53906484 53910106 Cca09g02834 09 53906484 53910106 ECH
Cca09g02834 09 53906484 53910106 Cca08g00303 08 4426374 4430429 PCT