Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00303 ATGATCACCTTACTAGACTTCTACCATGTGATGACTGCAATGGTACCACTCTATGTGGCCATGATATTAGCCTATGGCTCAGTGAAGTGGTGGAAGATCTTTTCCCCTGATCAATGTTCTGGTATCAACCGTTTTGTGGCACTCTTTGCAGTGCCTCTCCTTTCCTTCCACTTCATAGCCTCCAACAACCCTTACAAGATGAACCTTCGCTTCCTAGCTGCTGACACCCTTCAGAAGATCATAATCCTAGTCCTTCTTGCACTTTGGAGCAACTTCTCCAAAAGGGGTTGCTTGGAATGGACCATAACCTTGTTCTCCCTCTCCACCCTCCCAAACACTTTGGTCATGGGAATCCCTTTGCTCAAGGGTATGTATGGAGACTTCTCAGGGAGCCTCATGGTGCAAATTGTGGTCCTTCAGTGCATCATTTGGTACACCTTGATGCTCTTCATGTTTGAGTTCAGAGGTGCTAGAATGTTGATCTCTGAGCAGTTTCCTGACACTGCTGGTTCCATTGTCTCCATCCATGTTGACTCTGATGTCATGTCTTTGGATGGAAGGCAACCACTTGAGACTGAAGCTGAGATCAAGGAAGATGGGAAGCTTCATGTGACTGTGAGAAAATCCAATGCTTCAAGATCAGATATCTTCTCTAGAAGGTCTCAGGGTCTTTCTTCCACCACTCCACGCCCTTCTAACCTCACCAATGCAGAGATATACTCTTTGCAATCCTCTAGGAACCCCACACCAAGAGGGTCTAGTTTCAACCACACTGATTTCTACTCAATGATGGCTGCTGGTGGCAGGAACTCCAACTTTGGTGCCTCTGATGTTTATGGCCTTTCAGCTTCTAGAGGGCCTACTCCGAGGCCTTCTAACTATGATGAAGATGGTGGGAAGCCAAAGTATCATTACCATGCTGGTGGAACTGGACACTACCCTGCACCAAACCCTGGCATGTTCTCTCCCTCTAACGGGTCTAAAAGTGTTGCTAATGCTAATGCCAAGAGGCCTAATGGGCAGGCTCAGCTGAAGCCTGAGGATGGGAATAGGGACCTTCACATGTTTGTTTGGAGTTCAAGTGCTTCACCAGTTTCTGATGTGTTTGGTGGCCATGAGTATGGAGGTCATGACCAGAAAGAAGTCAAATTGACTGTTTCTCCTGGAAAAGTGGAGAATCATAGGGACACTCAAGAGGACTACCTAGAGAAAGATGAGTTCAGCTTTGGGAATAGAGGAATGGATAGGGAGATGAATCAGCTTGAGGGTGAGAAAGTTGTAGATGGGAAGCCAAAGACCATGCCTCCAGCAAGTGTGATGACAAGGCTTATTTTGATTATGGTGTGGAGAAAACTTATCAGAAACCCCAACACCTACTCTAGCTTAATTGGACTCACTTGGTCTCTTGTTTCATTCAGGTGGAATATTGAGATGCCTGCCATAATAGCGAAGTCTATTTCCATATTGTCAGATGCAGGGCTTGGCATGGCCATGTTCAGTCTTGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGAAATTCCATAGCAGCTTTTGCCATGGCTGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGTGTTCTACTACACGTTGCCATTGTTCAGGCAGCTCTTCCCCAAGGAATTGTCCCATTTGTCTTTGCAAAGGAATATAATGTACATCCTGATATTCTCAGCACAGCTGTTATTTTTGGGATGTTGATTGCATTGCCCATAACTCTAGTGTACTACATCTTGTTGGGGTTGTGA 1806 0.4601 MITLLDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYKMNLRFLAADTLQKIIILVLLALWSNFSKRGCLEWTITLFSLSTLPNTLVMGIPLLKGMYGDFSGSLMVQIVVLQCIIWYTLMLFMFEFRGARMLISEQFPDTAGSIVSIHVDSDVMSLDGRQPLETEAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGGRNSNFGASDVYGLSASRGPTPRPSNYDEDGGKPKYHYHAGGTGHYPAPNPGMFSPSNGSKSVANANAKRPNGQAQLKPEDGNRDLHMFVWSSSASPVSDVFGGHEYGGHDQKEVKLTVSPGKVENHRDTQEDYLEKDEFSFGNRGMDREMNQLEGEKVVDGKPKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWNIEMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFAMAVRFLTGPAVMAAASIAVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLVYYILLGL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00303 601 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 601 - -
Cca08g00303 601 MobiDBLite consensus disorder prediction 320 339 - -
Cca08g00303 601 Pfam Membrane transport protein 9 596 IPR004776 GO:0016021|GO:0055085
Cca08g00303 601 MobiDBLite consensus disorder prediction 213 235 - -
Cca08g00303 601 MobiDBLite consensus disorder prediction 282 348 - -
Cca08g00303 601 TIGRFAM 2a69: auxin efflux carrier 1 601 IPR014024 -
Cca08g00303 601 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1A 1 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00303 Cca-Chr8 4426374 4430429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00303 1 592 Organic Solute Cotransporters AT1G73590 75.160 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00303 K13947 - gmx:100499637 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02834 09 53906484 53910106 Cca08g00303 08 4426374 4430429 PCT