Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02789 ATGGGGAGCCCGGGATTGAGCAACCGCAATAATGGGCAGCAGCAATGGTTGGGCATAACAGAACCCATCACATTGGGTGGACCCACAGATTATGATGTGATCAAGACACGTGAACTTGAGAAGTATTTGCAAGATGCTGGCTTATATGAGAATCAGCAGGAGGCAGTTCGTAGGGAGGAAGTGCTTGGCAGGCTAGACCAGGTACATGGCCCTGGAGCAGATATAGACACTCTTTGTGTGGGGCCAAGACATGCATCCAGAGATGAGGATTTCTTTGGTGAGCTACATAAGATGCTATCCGAGATGCCAGAAGTAACAGAGTTGCACCCTGTGCCTGATGCTCATGTACCAGTAATGAAGTTCATGTTCAACGGTGTTTCTATAGATCTCCTTTATGCAAAATTATCTTTGTGGGTTATTCCTGAAGACTTGGATATATCCCAGGAGTCAATATTACAAAATGCAGATGAGCAAACTGTCCGTAGTCTTAATGGTTGTAGAGTGACTGATCAAGTCCTGCGTTTGGTTCCAAATATTCAGAATTTTCGTACAACATTGAGGTGCATGAGGTTTTGGGCAAAGCGTCGTGGAATTTATTCAAATGTTACAGGTTTTCTTGGTGGTATAAACTGGGCGTTGCTTGTTGCTCGAATATGCCAGCTATTTCCCAATGCACTGCCTAATATGTTAGTGTCTCGATTCTTCAGGGTATATACTCAGTGGCATTGGCCAAATCCAGTAATGCTTTGTGCTATAGAAGAGGGATCATTTGGACTTCAAGTTTGGGATCCCAGAAGATATCCCAAGGATAGATTCCACCTAATGCCGATAATAACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTGTCATCAAGTACATTGCGTATTATGACGGAGGAGTTTCAGAGGGGAAATGAAATATGTCAGGCTATGGAAGCTAACAAAGCTGATTGGGACAATCTTTTTGAGCCTTGTTCCTTTTTTGAAGCTTATAAGAATTATTTACAGATAGACATATCAGCAGAGAATGCTGAAGACCTTAGAAAATGGAAAGGCTGGGTTGTGTCTCGCCTGCGCCAGTTGACATTGAAAATTGAGAGGCACACTTATGGCATGCTTCAGTGTCATCCACATCCTGGTGACTTTTCAGACAAATCCAGATCTTTCCACTGCTCCTACTTCATGGGACTGCAACGTAAGCAAGGAGTTCCTGTCAGTGATGGTAAACAGTTCGATATAAGACCAACTGTTGAAGAATTTAAGCATTCTGTTAATATGTACACTCTATGGAAACCTGGAATGGATATCCATGTTTCCCATGTGAAACGTCGTAGTATACCTAACTTTGTATTTCCTGGTGGTGTTCGACCTTCCAGCCTATCTAAAGTAACTTGGGAGAGTAAGCAAAGTTCAGAATCAAGTGTTTCTGGCCATGGTCAAGCAGAAAAGTCTCAAGAAGGTAAAGTGGTTGTATTAGGAGCAAATGATGATAGGAAGAGAAAACAAGCAGAAGATAGTGTAGATAGCTTGAGAAATTCGAAGTCCCTTACATCTTTGCCTCCCTCCAGCAGGGACGTTCATGAAGATGGAAATCCTATTAGCACTGCTAGTTCTTGCTCTGTGAGATGTAATGACTCAGAAATCAATAGTATGAGTGAACTACAGAGTGAAAAACCTGATTTGAAATCTTCAGGGGAGTGTCCTGGGGATATAGAGACCAATGAATCAGTGAGAACCAACTTACAAGTTAATGCAACACTTACTGCCATGGATACATCTAGTTCTAAAGAAGCTGAAAAACTAGCCATTGAGAAGATTATGTGTAGTCCATATGATGCACAACAAGCCTTTTCAGAAGAACCTGATGAGCTTGAAGATGAAATTCTTGATTACAGAAATCAAGTGAAAGATTTAGGCGGGAACATGAAAAACAGCAACTTGGACTCCTCAAACTCAGAGACTGCAGTGGCTGGCGAACCAATTATTCCCAAGCGGGAGACCACTTCTGCTACTCGTTTATACTCAAATTGGGGCTCGGAAGAGCTTGAGCTGGCGGAGCCGACAGCACCACCTGTGCCACAGCGGAAGCCCCTTATCAGGTTGAACTTCACCTCCTTAGGGAAAGCTACTGACAAAAGTTCTTAG 2151 0.4286 MGSPGLSNRNNGQQQWLGITEPITLGGPTDYDVIKTRELEKYLQDAGLYENQQEAVRREEVLGRLDQVHGPGADIDTLCVGPRHASRDEDFFGELHKMLSEMPEVTELHPVPDAHVPVMKFMFNGVSIDLLYAKLSLWVIPEDLDISQESILQNADEQTVRSLNGCRVTDQVLRLVPNIQNFRTTLRCMRFWAKRRGIYSNVTGFLGGINWALLVARICQLFPNALPNMLVSRFFRVYTQWHWPNPVMLCAIEEGSFGLQVWDPRRYPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGNEICQAMEANKADWDNLFEPCSFFEAYKNYLQIDISAENAEDLRKWKGWVVSRLRQLTLKIERHTYGMLQCHPHPGDFSDKSRSFHCSYFMGLQRKQGVPVSDGKQFDIRPTVEEFKHSVNMYTLWKPGMDIHVSHVKRRSIPNFVFPGGVRPSSLSKVTWESKQSSESSVSGHGQAEKSQEGKVVVLGANDDRKRKQAEDSVDSLRNSKSLTSLPPSSRDVHEDGNPISTASSCSVRCNDSEINSMSELQSEKPDLKSSGECPGDIETNESVRTNLQVNATLTAMDTSSSKEAEKLAIEKIMCSPYDAQQAFSEEPDELEDEILDYRNQVKDLGGNMKNSNLDSSNSETAVAGEPIIPKRETTSATRLYSNWGSEELELAEPTAPPVPQRKPLIRLNFTSLGKATDKSS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02789 716 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 68 685 - -
Cca09g02789 716 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 68 - -
Cca09g02789 716 MobiDBLite consensus disorder prediction 464 540 - -
Cca09g02789 716 MobiDBLite consensus disorder prediction 511 540 - -
Cca09g02789 716 MobiDBLite consensus disorder prediction 643 669 - -
Cca09g02789 716 MobiDBLite consensus disorder prediction 494 510 - -
Cca09g02789 716 Gene3D Poly(A) polymerase predicted RNA binding domain 328 443 - -
Cca09g02789 716 Pfam Poly(A) polymerase predicted RNA binding domain 328 388 IPR007010 GO:0003723|GO:0043631
Cca09g02789 716 Pfam Poly(A) polymerase predicted RNA binding domain 387 459 IPR007010 GO:0003723|GO:0043631
Cca09g02789 716 SUPERFAMILY PAP/OAS1 substrate-binding domain 177 326 - -
Cca09g02789 716 CDD NT_PAP_TUTase 57 176 - -
Cca09g02789 716 MobiDBLite consensus disorder prediction 553 574 - -
Cca09g02789 716 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 328 453 IPR011068 GO:0003723|GO:0016779|GO:0031123
Cca09g02789 716 MobiDBLite consensus disorder prediction 643 658 - -
Cca09g02789 716 Pfam Poly(A) polymerase central domain 18 326 IPR007012 GO:0004652|GO:0043631
Cca09g02789 716 PANTHER POLY A POLYMERASE 1 68 - -
Cca09g02789 716 PANTHER POLY A POLYMERASE 68 685 - -
Cca09g02789 716 MobiDBLite consensus disorder prediction 464 483 - -
Cca09g02789 716 SUPERFAMILY Nucleotidyltransferase 18 175 IPR043519 -
Cca09g02789 716 Gene3D - 145 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02789 Cca-Chr9 53533868 53543299 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02789 K14376 - gmx:100816915 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00276 08 3898640 3906158 Cca09g02789 09 53533868 53543299 ECH
Cca09g02789 09 53533868 53543299 Cca09g02789 09 53533868 53543299 ECH