Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00276 ATGAATCAGATTGTGAAGATTTGGGTTAAGAACATTAGCCGTGCAAAGGGGTTCAATGAACAACTGGTGCAAGAGGCAAATGCCAAGATTTTCACCTTTGGTTCTTATCGACTAGGGGTGCATGGCCCTGGAGCTGATATAGATACCCTCTGTGTGGGACCTAGACATGCAACCAGAGATGACGATTTCTTTGGTGAGCTACAGAAGATGCTATCTGAGATGCAGGAAGTAACAGAATTGCACCCTGTGCCTGATGCTCATGTCCCTGTGATGAAATTCAAGTTTAATGGAGTTTCTGTTGATCTCCTGTATGCAAGATTAGCTTTGTGGGTTATTCCTGAAGACTTGGATATATCACAGGAATCTATATTACAAAATGTTGATGAACAAACTGTTCTTAGTCTTAATGGTTGTAGAGTAACTGATCAGGTCCTGCGATTGGTTCCAAATATTCAGACCTTTCGCACAACATTGAGATGCATGAGGTTTTGGGCAAAGCGCCGTGGTGTTTATTCAAATGTTGCTGGTTTTCTTGGTGGTATAAACCTGGCATTGCTTGTTGCTCGAATATGCCAGTTATATCCTAATGCACTACCTAATATGTTAGTGTCTCGATTCTTTAGGGTATATACTCAATGGCGATGGCCAAATCCGGTCATGCTTTGTGCTATTGAAGAAGGATCTCTTGGACTACCAATTTGGGATCCCAGAAGAAATCCCAAAGATAGATATCATCTAATGCCTATAATTACTCCTGCTTATCCTTGCATGAACTCTACTTACAATGTGACAGCAAGTACATTGCGTGTTATGTCAGATGAGTTTCAGAGGGGAAGTGACATATGTGAGGCCATGGAAGCTAGCAAGGCTGATTGGGATACTCTTTTTGAGCCTTATCCCTTTTTTGAATCTTACAAGAACTATCTACAGATAGACATAACAGCGGAGAATGCAGATGACCTTAGACAATGGAAAGGCTGGGTTGAGTCTCGACTCCGTCAGTTGACATTGAAGATCGAGAGGCACACTTTTGGTATGCTTCAATGTCATCCACATCCTGGTGAGTTCTCGGACAAATCTAGACCTTTTCACCACTGTTACTTTATGGGTCTGCAGCGTAAGCAAGGAGTTCCAGTGAATGATGGTGAGCAGTTTGATATAAGGCTAACTGTCGAAGAGTTTAAGCATTCTGTCAATGCTTACACTCTATGGAAACCTGGAATGGATATCTATGTGTCCCATGTGAAACGCCGCAACATACCTAACTACATATTCCCTGGCGGTGTGCGGCCTTCCTGTCCGTCAAAAGTAGCTAACGAGAATAAACAAAGTTCCAAATTTAGGAGCTCCGGCCATGGTCAAGCCGAAAAACCTCAAGGAGGTAAAGCAGTTGCAGTCGAAGCAGATGATGCAAGGAAGAGAAAGAGATCAGAGGACATGGATAATAACTCAAAGAATTCCAAGCCCTCTATATCTCTACCTCTGCCCAGCAGGGAAGTTCATGAAGATAGAACTCCTATTAGTGCTTCAAGTTCTTGTTCTATGAAATTTGATGAAGCCGAAGTCAATAGTATGGTTGGACAGAAGAGCGAGAAAATTTGTCTGAAATCTCCAGGGGAGATTCCTTCTGGCGATATTGGGACCAATGGATCAGTGACAAACAATCAACAAGGGAACCCCGTACTTGCAGCTACTAGTAACTCTAAGGAAGAAGAAAAGTTAGCCATTGAAAAGATTATGTCTGGCCCTTATGAAGCACATCAAGCCTTTCTGGAAGAACCTGAAGAGCTTGAAGATGATACTGAGTATAGAAACCTAGTCAAAGATTCTGGAGAGAGCATGAAAAACAACCTGGAATCTTCAAACTCAAAGCCTGCAGTGGCAGAAGTCCCAGTTATGTCTAAGGAAACTACTTGTTCAGCTTATCTACACCCGAATGAGGGCTTGGAGGAGCTTGAGCCTGCTGAGCTGACAGCACCATTGTTAAGTGTGACTCCAGCACCAGTCCCGCTAAAGAAGCCTCTTATCAGGTTGAACTTCACCTCCCTAGGAAAAGCTGCTGACAAAAGTTCTTAG 2076 0.4302 MNQIVKIWVKNISRAKGFNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRDDDFFGELQKMLSEMQEVTELHPVPDAHVPVMKFKFNGVSVDLLYARLALWVIPEDLDISQESILQNVDEQTVLSLNGCRVTDQVLRLVPNIQTFRTTLRCMRFWAKRRGVYSNVAGFLGGINLALLVARICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLPIWDPRRNPKDRYHLMPIITPAYPCMNSTYNVTASTLRVMSDEFQRGSDICEAMEASKADWDTLFEPYPFFESYKNYLQIDITAENADDLRQWKGWVESRLRQLTLKIERHTFGMLQCHPHPGEFSDKSRPFHHCYFMGLQRKQGVPVNDGEQFDIRLTVEEFKHSVNAYTLWKPGMDIYVSHVKRRNIPNYIFPGGVRPSCPSKVANENKQSSKFRSSGHGQAEKPQGGKAVAVEADDARKRKRSEDMDNNSKNSKPSISLPLPSREVHEDRTPISASSSCSMKFDEAEVNSMVGQKSEKICLKSPGEIPSGDIGTNGSVTNNQQGNPVLAATSNSKEEEKLAIEKIMSGPYEAHQAFLEEPEELEDDTEYRNLVKDSGESMKNNLESSNSKPAVAEVPVMSKETTCSAYLHPNEGLEELEPAELTAPLLSVTPAPVPLKKPLIRLNFTSLGKAADKSS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00276 691 MobiDBLite consensus disorder prediction 544 566 - -
Cca08g00276 691 Gene3D Poly(A) polymerase predicted RNA binding domain 300 415 - -
Cca08g00276 691 Pfam Nucleotidyltransferase domain 13 107 IPR002934 GO:0016779
Cca08g00276 691 Gene3D - 143 296 - -
Cca08g00276 691 MobiDBLite consensus disorder prediction 431 512 - -
Cca08g00276 691 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 2 616 - -
Cca08g00276 691 PANTHER POLY A POLYMERASE 2 616 - -
Cca08g00276 691 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 299 425 IPR011068 GO:0003723|GO:0016779|GO:0031123
Cca08g00276 691 MobiDBLite consensus disorder prediction 436 452 - -
Cca08g00276 691 MobiDBLite consensus disorder prediction 536 569 - -
Cca08g00276 691 MobiDBLite consensus disorder prediction 466 483 - -
Cca08g00276 691 Pfam Poly(A) polymerase predicted RNA binding domain 301 359 IPR007010 GO:0003723|GO:0043631
Cca08g00276 691 CDD NT_PAP_TUTase 20 148 - -
Cca08g00276 691 Gene3D Beta Polymerase, domain 2 1 142 IPR043519 -
Cca08g00276 691 SUPERFAMILY Nucleotidyltransferase 2 147 IPR043519 -
Cca08g00276 691 Pfam Poly(A) polymerase central domain 2 298 IPR007012 GO:0004652|GO:0043631
Cca08g00276 691 SUPERFAMILY PAP/OAS1 substrate-binding domain 149 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00276 Cca-Chr8 3898640 3906158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00276 K14376 - gmx:100816915 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00276 08 3898640 3906158 Cca09g02789 09 53533868 53543299 ECH
Cca08g00276 08 3898640 3906158 Cca08g00276 08 3898640 3906158 ECH