Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02707 ATGAGTAGTAGCAGTGGTAAGAAAAGGTTCATTCCTAGTAATCTGGAACAGGCTGCAGTGGAGTTGTTAAACCATCTTGTGAAGGTGAAGGAGAAGAAGGGGTGGGTTTCACTCTTCATTCCACTCATTTTGATTGCTTGGGCTATTCACACATGCCTCGTCTCTTTCTCCAATTGGCTTCTCCTTGCACTTGCTCTATGGGCATCTCTACAATATGGGAATTACCAGCGCAAACTGCTTGAGGAGGACTTGAATAAGAAATGGAACCGGATCCTACTCAACACCTCGCCCGTGACACCATTGGAACACTGTGAGTGGTTTAATCTTCTGTTGACACAAATTTGGTCCAACTACTTTAACCCAAAGCTCTCACGAAGGTTATCAGCCATAGTAGAGAAACGATTAAAGCTCCGGAAACCAAGATTTATAGAAAAAGTTGAGGTGCAAGAGTTTTCACTTGGATCATGCCCTCCAAGTTTGGGTCTTCAAGGGATGCGATGGTCAACCTCTGGTGGTCAGCGAGTCCTGAAAATGGGTTTTGATTGGGACACGAGTGAAATGAGCATTTTGATGCTTGCTAAGCTTTCCGTTGGAACTGCCAGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTATGGTGACACCAATTCTAGATGGAAAAGCACTTCTGTATTCATTTTTATCGACACCTGAGGTGAGAATAGGAATTGCATTTGGAAGCGGAGCAAGCCAATCAGCCACTGAGTTGCCTGGCGTTTCTCCATGGCTGGTTAAACTTTTTACTGATACCTTAGTTAAAACCATGGTGGAACCTAGGCGTCGTTGTTTCAGTTTGCCTGTGGTTAATTTGAGGAAAACTGCTGTTGGAGGCATTATATATGTGTCAGTGATTTCAGCAAACAAACTTTCTAGGAGTTACTTCAAGAGTAGCCCATCTTTGAGGCAACAAAATAGCACAATCAATGGATGTTCAGAAAATAACCTGGATGACAAGGACCTGCAGACGTTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTCTGAGCCATGGTTCAACTCCAATGTGGGATACAACATTTAATATGGTTTTACATGATAATACAGGAATTGTTCGCTTCAATCTTTATGAGTGTCCCTCTAGTGGTGTCAAGTGTGACCATCTAGCAAGTTGTGAAATCAAGATGAGGCATGTTGAAGATGATTCTACAATAATGTGGGCAATAGGACCTGATTCTAGTATAATAGCAAAGCATGCAAAGTTTTGTGGAGATGAAGTTGAAATTGTTGTTCCGTTTGAGGGGACCAACACAGCAGAGTTAAAGGTGAAGATTGTAGTAAAAGAGTGGCAGTTTTCTGATGGTTCGCATAGCTTGAACAACCTCCGTGCTAATTCTCAGCAATCACTTATTGGATCATCAAGTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACTGTTGTAGAAGCAAAGGATCTCGTTGCAAAAGACAAAGCTGGAAAAATTGATCCATACGTTAAATTGCAATACGGAAAGGTTATCAAGAGAACACAGGTTGctcctcctccttctcctccAAATCCTGTCTGGAATCAATCATTTGAATTTGATGAGAGTGGTGGTGATGAATACCTAAATGTAAAATGCTTCAGTGAAGAAATTTTTGGTGATGAAAATATTGGTAGTGCAAATGTAAATTTGGAAGGACTTGAGGATGGGTCAATCAAGGATGTATGGATCCCTCTTGAAGGAGTGAGTTCTGGTGAATTAAGACTTAAAATTGAAGTAGTTAGAGGGGACGACCAAGAAGGATCAAGGGGTTCAGTCAGTGGTTGGATAGAACTTGTTGTGATTGAAGCAAGGGATCTTATTGCTGCTGATCTTCGAGGGACAAGTGATCCTTACGTGAGGGTAAACTATGGAAACCAGAAGAAAAGGACAAAGGTTATACACAAAACTCTCAACCCTCGTTGGAACCAGACCTTAGAGTTCCTTGACAATGGAAACCCCTTGATACTACATGTTAAGGACCACAATGCTTTACTACCCACATCAAGTATAGGTGAATGTGTCGTGGAATATCAAAGGTTGCCTCCAAACCAGATGTCTGACAAGTGGATACCTCTCCAAGGAGTGAAAAGTGGTGAGATCCACATCCAAATTACAAGAAAAGTTCCAGAGGTGCAAACAAGACGTATTCTAGATTCTGAATCTTCTTCGTTAAGTAAATCACACCAAATTCCTACCCAGATGAGAGAGATGGTGAAGAAGTTTAGATCATTAATAGAGGATGGAAATCTTGAAGGACTGTCTACAACTTTGAGTGAGTTAGAAAGTCTAGAGGATACACAGGAAGGGTATATACAACAGTTGGAGACCGAGCAAATGCTGCTTCTGAGCAAAATAAATGAACTGGGTCAGGAGATCATCAATTCTTCTTCCGTCAGTAGTAGTCCTTATCAAAGTGGAAATTGA 2487 0.4093 MSSSSGKKRFIPSNLEQAAVELLNHLVKVKEKKGWVSLFIPLILIAWAIHTCLVSFSNWLLLALALWASLQYGNYQRKLLEEDLNKKWNRILLNTSPVTPLEHCEWFNLLLTQIWSNYFNPKLSRRLSAIVEKRLKLRKPRFIEKVEVQEFSLGSCPPSLGLQGMRWSTSGGQRVLKMGFDWDTSEMSILMLAKLSVGTARIVINSLHIKGDLMVTPILDGKALLYSFLSTPEVRIGIAFGSGASQSATELPGVSPWLVKLFTDTLVKTMVEPRRRCFSLPVVNLRKTAVGGIIYVSVISANKLSRSYFKSSPSLRQQNSTINGCSENNLDDKDLQTFVEVEVEELTRRTGLSHGSTPMWDTTFNMVLHDNTGIVRFNLYECPSSGVKCDHLASCEIKMRHVEDDSTIMWAIGPDSSIIAKHAKFCGDEVEIVVPFEGTNTAELKVKIVVKEWQFSDGSHSLNNLRANSQQSLIGSSSLLSKTGRKLKITVVEAKDLVAKDKAGKIDPYVKLQYGKVIKRTQVAPPPSPPNPVWNQSFEFDESGGDEYLNVKCFSEEIFGDENIGSANVNLEGLEDGSIKDVWIPLEGVSSGELRLKIEVVRGDDQEGSRGSVSGWIELVVIEARDLIAADLRGTSDPYVRVNYGNQKKRTKVIHKTLNPRWNQTLEFLDNGNPLILHVKDHNALLPTSSIGECVVEYQRLPPNQMSDKWIPLQGVKSGEIHIQITRKVPEVQTRRILDSESSSLSKSHQIPTQMREMVKKFRSLIEDGNLEGLSTTLSELESLEDTQEGYIQQLETEQMLLLSKINELGQEIINSSSVSSSPYQSGN 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02707 828 Gene3D C2 domain 469 602 IPR035892 -
Cca09g02707 828 Gene3D C2 domain 606 728 IPR035892 -
Cca09g02707 828 PANTHER OS01G0128800 PROTEIN 4 824 - -
Cca09g02707 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 486 603 IPR035892 -
Cca09g02707 828 ProSiteProfiles C2 domain profile. 590 711 IPR000008 -
Cca09g02707 828 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 100 281 IPR031468 GO:0008289
Cca09g02707 828 SMART C2_3c 293 411 IPR000008 -
Cca09g02707 828 SMART C2_3c 486 583 IPR000008 -
Cca09g02707 828 SMART C2_3c 616 710 IPR000008 -
Cca09g02707 828 Coils Coil 792 812 - -
Cca09g02707 828 Pfam C2 domain 486 586 IPR000008 -
Cca09g02707 828 Pfam C2 domain 617 713 IPR000008 -
Cca09g02707 828 Pfam C2 domain 293 405 IPR000008 -
Cca09g02707 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 614 726 IPR035892 -
Cca09g02707 828 CDD C2 617 713 - -
Cca09g02707 828 PANTHER PLANT SYNAPTOTAGMIN 4 824 - -
Cca09g02707 828 ProSiteProfiles C2 domain profile. 465 584 IPR000008 -
Cca09g02707 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 288 407 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02707 Cca-Chr9 52735125 52742314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02707 474 762 Lipid Metabolism Gene Families AT3G57880 26.113 5.70e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02707 - - ccaj:109803570 1583.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00231 08 3216778 3224342 Cca09g02707 09 52735125 52742314 ECH
Cca09g02707 09 52735125 52742314 Cca09g02707 09 52735125 52742314 ECH
Cca09g02707 09 52735125 52742314 Cca08g00231 08 3216778 3224342 PCT