Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00231 ATGAGCTTGAAGAAAAGGGGTCTTTCAAATAACATTGAAGAGGCTGCAGTTGACTTCTTCAACCATCTCTTGCAGGAGAAGCCAAGGATTCCAGTTTTCATTCCTGTGATTCTGATTGCTTGGGCTGTTGAGAGATGGCTCTTCTCTGCCTCCACTTGGGTTCCTCTTGCACTTGCTGTGTGGACCACTATACAGTATGGGAGATACCAACGCAAACTGCTTGTGGAGGACTTGGATAAGAAATGGAAGCGAATCATACTAAATGTCTCGCCCATCACACCATTGGAGCACTGTGAGTGGCTCAATAAGTTGTTGACAGAAGTCTGGTCCAACTACTTTAATCCCAAGTTTTCAATAAGGCTATCTGCTATAGTTGAGAAACGTTTAAAGCTCCGGAAACCAAGACTACTAGAAAGAGTTGAGCTGCAGGAGTTTTCACTAGGATCATGCCCTCCTAGCTTGGCTCTGCAAGGGATGCGGTGGTCAACTATTGGTGATCAGCGATTCCTGCAACTGGGTTTTGATTGGGATACAAGTGAAATGAGCATTTTGTTGCTTGCTAAGCTTGCAAAGCCATTGATTGGAACTGCTCGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTTATTACACCAATTCTAGATGGAAAAGCACTTCTGTATTCTTTTGTATCAACTCCTGAGCTGAGAATAGGAGGGGGGAAAACCCAGTCCCTCCCTGCCACTGAGTGGCCTGGTGTTTCTTCTTGGCTGGAAAAGCTTTTTACTGACACCTTGGTTAAAACCATGGTGGAACCTCGGCGTCGTTGTTTCACTTTGCCTGCAGTTGATTTAAGGAAAAAAGCAGTTGGAGGCATTATATATATTAGAGTGATTTCAGCAAATAAACTTTCTAGGAGTTGCTTTAAGACATCTAGGAGGCAGCCAAATGGTACAACCAACGGTTGTTCAGAGGACAATTTTGATCACAAGGACCTAGAGACATTTGTAGAGGTAGAAGTGGAGGAGTTAACCAGGAGAACAGATGTCAGACTTGGTTCAACCCCCAGATGGGATGCACCATTCAATATGGTTTTACATGATAATGCGGGAACTCTTCGATTCAATCTTTATGAGTGTCTTCCCAACAATGTGAAGTGTGACTATCTAGCAAGTTGTGAAGTCAAGTTGAGGCACGTTGAAGATGATTCAACAATAATGTGGGCCATAGGACCTGATTCTGGAGTCATAGCAAAGCAAGCAATGTTTTGTGGAGATGAAATTGAAATGGTTGTCCCGTTTGAGGGGGCCAACTCTGGAGAGTTGAAGGTGAGCGTTGTAGTAAAAGAGTGGCAATTTTCTGATGGTTCACATAGTTTGAACAGTCTCCGGAGTAGCAGCTCTCAGCAGTCAATTAATGGATCACCAAATCTTCAGTTAAGAACCGGAAGGAAACTTAGTGTAACTGTTGTAGAAGGAAAGGATCTTGCTGCAAAAGACAAATCTGGAAAATTTGATCCATACATCAAATTGCAATATGGAAAGGTTGTCCAGAAATCAAGGACTGTTCATACTCCAAATCCTGTCTGGAATCAGACGTTTGAATTCGATGAGATTGGTGGTGGGGAATACTTAAAAATAAAGGCCTTTACTGAAGAAATTTTTGGAGATGAAAACATTGGTAGTGCACATGTGAATTTGGAAGGACTTGTTGATGGCTCAGTCAGGGATGTATGGATCCCTCTTGAAAGAGTGCGTTCTGGAGAATTAAGACTTCAAATAGCAGTTAGAGCGGATGACCAAGAAGGATCAAAGggttcgggttcagggtcagggtcaggCAATGGTTGGATTGAACTTGTTCTGATAGAGGGAAGGGATCTTGTTGCTGCTGATCTCAGAGGCACAAGTGATCCATATGTGAGGGTACACTACGGAAACTTTAAGAAAAGGACAAAGGTCATATACAGAACTCTTAACCCTCAGTGGAACCAGACCTTAGAATTCCCTGATGATGGAAGTCCCCTAATGCTTTATGTCAAGGATCACAATGCATTACTACCCACATCAAGTATAGGTGAATGTGCTGTAGAATATCAAAGGTTGCCTCCAAACCAGACAGCCGACAAGTGGATACCTCTCCAAGGGGTGAAAAGGGGTGAAATTCACATCCAAATTACCAGAAAAGTTCCAGAGATGCAGAAGAGGCAAAGTCTAGACTCTGAACCTTCCTTGAGTAAACTACACCAAATTCCTAACCAGATAAAACAGATGATGATCAAGTTCAGGTCCTTCATAGAGGATGGAAATCTAGAAGGACTCTCCACCACATTGAGAGATCTTCTTCAGCTGGAAACTGATCTGCATCAACTTGTTCTTTTCTGGGGAGGGGGATGCATAATAATGGAAGGAGTTACTGTACTCACACTTGCACAGGAAACTAGGTTCAATGACTCTGGCTGGATTTCTGTATAA 2460 0.422 MSLKKRGLSNNIEEAAVDFFNHLLQEKPRIPVFIPVILIAWAVERWLFSASTWVPLALAVWTTIQYGRYQRKLLVEDLDKKWKRIILNVSPITPLEHCEWLNKLLTEVWSNYFNPKFSIRLSAIVEKRLKLRKPRLLERVELQEFSLGSCPPSLALQGMRWSTIGDQRFLQLGFDWDTSEMSILLLAKLAKPLIGTARIVINSLHIKGDLLITPILDGKALLYSFVSTPELRIGGGKTQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRKKAVGGIIYIRVISANKLSRSCFKTSRRQPNGTTNGCSEDNFDHKDLETFVEVEVEELTRRTDVRLGSTPRWDAPFNMVLHDNAGTLRFNLYECLPNNVKCDYLASCEVKLRHVEDDSTIMWAIGPDSGVIAKQAMFCGDEIEMVVPFEGANSGELKVSVVVKEWQFSDGSHSLNSLRSSSSQQSINGSPNLQLRTGRKLSVTVVEGKDLAAKDKSGKFDPYIKLQYGKVVQKSRTVHTPNPVWNQTFEFDEIGGGEYLKIKAFTEEIFGDENIGSAHVNLEGLVDGSVRDVWIPLERVRSGELRLQIAVRADDQEGSKGSGSGSGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGNFKKRTKVIYRTLNPQWNQTLEFPDDGSPLMLYVKDHNALLPTSSIGECAVEYQRLPPNQTADKWIPLQGVKRGEIHIQITRKVPEMQKRQSLDSEPSLSKLHQIPNQIKQMMIKFRSFIEDGNLEGLSTTLRDLLQLETDLHQLVLFWGGGCIIMEGVTVLTLAQETRFNDSGWISV 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00231 819 ProSiteProfiles C2 domain profile. 459 575 IPR000008 -
Cca08g00231 819 CDD C2 481 577 - -
Cca08g00231 819 PANTHER PLANT SYNAPTOTAGMIN 1 781 - -
Cca08g00231 819 CDD C2 613 709 - -
Cca08g00231 819 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 607 722 IPR035892 -
Cca08g00231 819 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 479 589 IPR035892 -
Cca08g00231 819 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 94 276 IPR031468 GO:0008289
Cca08g00231 819 ProSiteProfiles C2 domain profile. 594 707 IPR000008 -
Cca08g00231 819 Gene3D C2 domain 466 592 IPR035892 -
Cca08g00231 819 Gene3D C2 domain 605 724 IPR035892 -
Cca08g00231 819 Pfam C2 domain 480 577 IPR000008 -
Cca08g00231 819 Pfam C2 domain 288 397 IPR000008 -
Cca08g00231 819 Pfam C2 domain 613 709 IPR000008 -
Cca08g00231 819 SMART C2_3c 612 706 IPR000008 -
Cca08g00231 819 SMART C2_3c 288 404 IPR000008 -
Cca08g00231 819 SMART C2_3c 480 574 IPR000008 -
Cca08g00231 819 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 324 400 IPR035892 -
Cca08g00231 819 PANTHER OS01G0128800 PROTEIN 1 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00231 Cca-Chr8 3216778 3224342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00231 451 753 Lipid Metabolism Gene Families AT3G57880 23.677 5.01e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00231 - - gmx:100789237 1410.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00231 08 3216778 3224342 Cca09g02707 09 52735125 52742314 ECH
Cca08g00231 08 3216778 3224342 Cca08g00231 08 3216778 3224342 ECH
Cca09g02707 09 52735125 52742314 Cca08g00231 08 3216778 3224342 PCT