Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02706 ATGCGATTGAGCATCACAAGTGCCTTACAGTCATCACTCCCACTCGCGTCACCCTCTTCTCTCAGAATCCGCATTCGCATTCGCATTCGCGCTCTCACCTCCTCTTCTCTCCCAACCACCCACGACCACCAAGACTTGTTCCACCCTCTCCCTCTTCCCACTCCCCGCCACGTCGACAGAGCCCCCAACGCCATCGAGAAAATCGCCCTCCGCTTGCGCAACTTAGGGTTAGCCTCCGCCGATCACTCTGATGCCAACGACGATTTCCTGAACCGCGAATGGCTTCGCCCCGACCACGCGCTTTTGCCCTGGGACAAGGAACAACAGGAGCAAGAGGAACGTCAGCCAAAGAAGAAGAAGAAGGTTAATGCGGCCACAGTGGCGGAGGAGGAGGACCTGCGTCGGTTGCGAACGCTTGGAATGCGCCTTAAGGAGAAGGTCAATGTCCCCAAAGCTGGACTCACACCGTCCGTGCTCCACAAAATTCACCATCGCTGGAGAAACTGCGAGTTGGTGAGGCTCAAGTTTCACGAGCTTCTTGCTCAGAACATGAAGCTGGCTCATCAAATTGTCGAGCATAGAACGGGAGGGTTGGTTATATGGAGGTCGGGAAGTGTTATGTGGGTGTACCGTGGGAGGAATTACCAAGGGCTGGCGCAACTGAGTATAAAGGAAGGTGGTGATCAAATTTCTGTGCCGGCAGATGGTGATGCCACATCATCATTGCTGGAAAAGAGTGCGGTAGTTATGTGGAAGGGGGAGAACATGACGCCAGAGGAAGTGGAGTTCAACAGGATGCTTGATGACTTTGGTCCTCGTTATGTTGAATGGTGGGGTACTGGAATACTTCCTGTTGATGCCGATTTGCTTCCCCCAACAGTTCCTGGTTACAAGACACCTCTTAGGCTTCTTCCTGCTGGAATGCGTCCACGGTTGACCAATGATGAACTGACAAATATGCGGAAGCTTGCTAAATCTCTTCCTTGTCACTTTGCCTTGGGGAGAAATCGAAATCTTCAAGGCCTGGCATCTGCTATTCTTAGACTTTGGGAGAAAAGTTTAGTTGCGAAGATTGGTGTCAAGCGAGGCATTGTGAATACAAACAATGAACTAATGGCTCTGGAGCTGAAGAAATTAACAGGAGGTACCTTACTGCTAAGAAATAAGTATTACATTGTAATATATCGCGGGAAGGACTTTGTTCCAACCAGTGTGGCCGCAGTTATTGCTGAAAGACAGGAATTGACAAAACAGGTGCAGGATGTCGAGGAGAAAGCCCGGTGCAAAGCTCTTGATGTAGCTCCATTAGGGGAAGGTGAATTGACAGCACAAGCAGGATCATTGGCTGAGTTCTATGAGGCTCAGGCATGCTGGGGAAGGGATATATCTGCAGAAGAACGGGAGAGGATGATGCAAGAGGTTGCCAAAGCTAATAATGCTAAGCTTGTCAAAAAAATTGAACGCAAACTAGCTGTTGCCCAGACCAAAAGGCTTAGAGCAGAACAGCTATTAGCTAAACTAGAAGCCTCATTGGTTCTAGCTGGTCCTGATCATGACAAGGAAACAATCACAGATGAAGAACGCATTATGTTCCATTCAGTTGGTTTAAGAATGAAGGCATACTTGCCACTTGGTATACGTGGTGTTTTTGATGGTGTCATTGAGAATATGCATTTGCATTGGAAACATCGAGAACTTGTTAAATTAATAACAAAACAAAAGACCCTTGCTTTTGTTGAAGACACGGCTAGGCTACTTGAATACGAGAGTGGTGGAATACTTGTAGCAATAGATAAAGTTCCTAAAGGATTTTCTCTTATTTACTATCGTGGAAAGAATTATAGGCGACCTATGACTCTGAGGCCTAGAAACCTTCTAACAAAGGCAAGGGCATTGCAGCGTTCAATAGCCATGCAACGGCATGAGGCTCTGAGTCAGCATATAACTGAACTGGGGAAAAAAATAGAAGAAATGAAAAAAGAACTTAGTGAAGTTGAATACTCTTATGGAGATGACAATGATAGTGATTTCAGTGACAAGGAATACAGCGATTCTAATGACGAGGATTGTGAATTTTAA 2079 0.4675 MRLSITSALQSSLPLASPSSLRIRIRIRIRALTSSSLPTTHDHQDLFHPLPLPTPRHVDRAPNAIEKIALRLRNLGLASADHSDANDDFLNREWLRPDHALLPWDKEQQEQEERQPKKKKKVNAATVAEEEDLRRLRTLGMRLKEKVNVPKAGLTPSVLHKIHHRWRNCELVRLKFHELLAQNMKLAHQIVEHRTGGLVIWRSGSVMWVYRGRNYQGLAQLSIKEGGDQISVPADGDATSSLLEKSAVVMWKGENMTPEEVEFNRMLDDFGPRYVEWWGTGILPVDADLLPPTVPGYKTPLRLLPAGMRPRLTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIGVKRGIVNTNNELMALELKKLTGGTLLLRNKYYIVIYRGKDFVPTSVAAVIAERQELTKQVQDVEEKARCKALDVAPLGEGELTAQAGSLAEFYEAQACWGRDISAEERERMMQEVAKANNAKLVKKIERKLAVAQTKRLRAEQLLAKLEASLVLAGPDHDKETITDEERIMFHSVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDKVPKGFSLIYYRGKNYRRPMTLRPRNLLTKARALQRSIAMQRHEALSQHITELGKKIEEMKKELSEVEYSYGDDNDSDFSDKEYSDSNDEDCEF 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02706 692 SUPERFAMILY YhbY-like 130 219 IPR035920 -
Cca09g02706 692 Coils Coil 483 510 - -
Cca09g02706 692 PANTHER (CRM) DOMAIN PROTEIN, PUTATIVE-RELATED 19 685 - -
Cca09g02706 692 SMART CRS1_YhbY_2 312 396 IPR001890 GO:0003723
Cca09g02706 692 SMART CRS1_YhbY_2 128 211 IPR001890 GO:0003723
Cca09g02706 692 SMART CRS1_YhbY_2 523 610 IPR001890 GO:0003723
Cca09g02706 692 Gene3D - 522 622 IPR035920 -
Cca09g02706 692 Gene3D - 311 404 IPR035920 -
Cca09g02706 692 Gene3D - 129 223 IPR035920 -
Cca09g02706 692 ProSiteProfiles CRM domain profile. 126 222 IPR001890 GO:0003723
Cca09g02706 692 Pfam CRS1 / YhbY (CRM) domain 524 610 IPR001890 GO:0003723
Cca09g02706 692 Pfam CRS1 / YhbY (CRM) domain 130 211 IPR001890 GO:0003723
Cca09g02706 692 Pfam CRS1 / YhbY (CRM) domain 312 396 IPR001890 GO:0003723
Cca09g02706 692 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 19 685 IPR045278 GO:0000375|GO:0003729
Cca09g02706 692 ProSiteProfiles CRM domain profile. 310 407 IPR001890 GO:0003723
Cca09g02706 692 MobiDBLite consensus disorder prediction 666 680 - -
Cca09g02706 692 SUPERFAMILY YhbY-like 522 620 IPR035920 -
Cca09g02706 692 Coils Coil 405 425 - -
Cca09g02706 692 Coils Coil 641 668 - -
Cca09g02706 692 SUPERFAMILY YhbY-like 312 403 IPR035920 -
Cca09g02706 692 ProSiteProfiles CRM domain profile. 521 621 IPR001890 GO:0003723
Cca09g02706 692 MobiDBLite consensus disorder prediction 666 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02706 Cca-Chr9 52728018 52733408 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02706 - - gmx:100776626 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02706 09 52728018 52733408 Cca09g02706 09 52728018 52733408 ECH
Cca09g02706 09 52728018 52733408 Cca08g00230 08 3210061 3215237 PCT