Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00230 ATGGCGTTCACCAACACTTGTAATCTCTCTGAATTCTCTTTCAATtcatcactctcatcactcaaccctcctcgctcttcctctcacttccttcaatccccaTTTCGCATTCGCACCGTCGCCTTCGCTTCTCTCCCAACCCCTAAACCTAACATCTCCGCACCCTGGCTCACCAAATCCCCCTCTCCCAAAACCCTCCCCGCCGACGACCCCCCTCCCCGCGCCGCCGCCAACAAGCCGCAGAACGCCGTCGAGAGAATCGTCCTCCGGCTACGCAACGTAGGTTTGCCCACGGAAGAAGACCAACAACAACAACaagaagaagaagaagaagaagaagaaAACGAATCTCCGGCGAGTAATCTGCCGCCGGTGACCGGAGATGAGAGGCTCGTCGAGCTGCTCCGGCGAGAGTGGGTTCGGCCGGACGCCGCGTTGGCGGCCGGGGACGACGAGGAGGGGGAGGGGACAATGCTGCCGTGGGAGAGGGAGGAGGAGAAGGAGGTGGTGGTGGTGAGTGATGGAGAAGAGGGTTTGAGGGAGAGGAGGGTGAGGGCTCCGAGTTTGGCGGAGTTGACCCTGGAGGATGAGCTTTTGAGGAGGTTGAGAAGAGAGGGGATGCGTGTGAGGGAGAGGGTTAGTGTCCCCAAGGCTGGACTCACTCAGGAGGTCATGGAGAAGATTCACAAGAGGTGGAGCAAGGAGGAGCTGGTGAGGCTCAAGTTTCATGAGGAGCTTGCAAGGGACATGAAGAAGGCTCATGACATTGTTGAGCGTCGAACTGGAGGATTGGTTACGTGGAGGTCAGGAAGTGTTATGATGGTGTATCGTGGTATTGATTACCAAGGGCTTGACTCGCGGAAGGAAGTTGTTGAGAAGAAGAAAGGTGAGGGCTTTTTTGTGCCAGATGTATCGTCGGGAAGTTTGTTAAAAAGTGGAGACAGTAATGCAACCTCGTCTCTGGACAAGAGTGAGGTGGTTGTGAGGGAGCAAGAACAGCCTAAGAATGTGACAGAGGCGGAAGTAGAGTACAATGCACTGCTTGATGAATTAGGTCCTCGTTTTGTTGAATGGTGGGGCACGGGAATACTTCCTGTTGATGCTGATTTACTTCCCCGGACAGTTCCAGGTTACAAAACACCGTTTAGGCTTCTTCCTACAGGAATGCGTTCTCGGCTGACAAATGCAGAGATGACTAATTTAAGGAAGCTTGCAAAATCACTTCCTTGTCATTTTGCCTTAGGGAGAAATAGAAATCACCAAGGTCTGGCATGTGCTATCCTTAAGCTTTGGGAGAAAAGTTTAGTTGCTAAGATTGCTGTCAAACGTGGGATCCAGAACACGAACAATGAACTAATGTCTGAGGAGATTAAGATGTTAACAGGAGTTTTAGCTGAAAGAGAGGAATTGACAAAACAGGTACAGGATGTTGAAGACAAGGTGCGGTGCAGAGCAATTGATGCAATTCCATCAGAGCAAGTTGAAGCAAAAGTGCTGGCTGGGACTTTAGCAGAGTTCTACGAGGCCCAGGCTCGATGGGGAAGAGAAATATCTAGTGAAGAACGTGAGAAGATGATGGAAGAAGCTGCCAAAGCCAAGACTGTCAAGCTTGTCAGACAAATTGAACATAAACtatctataGCCCAGGTCAAAAAACATAGAGCAGAAAAGCTGTTAGCCAAAATAGAAGCATCTATGGTTCCAGCTGGTCCAGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTAAAGTTGGTTTAAGAATGAAGCCATACTTACCACTTGGGATACGTGGCGTTTTTGATGGTGTTGTTGAGAATATGCATTTGCATTGGAAACACCGAGAACTTGTAAAATTGATGACAAAACAAAAGACTCTTGCTTTTGTTGAAGACACAGCAAGGCTACTGGAATACGAGAGTGGTGGAATACTGGTGGCAATAGAGAAAGTTTCCAAAGAATTCGCTCTTATTTACTATCGTGGAAAGAATTACAAGCGACCCATTACTCTGAGGCCTAGGAACCTTCTAACAAAGGGAAAGGCGTTAAAGCGTCATGTAGCCATGCAACGTCATGAGGCTCTGAGTCAGCATATTACTGAATTGGAAAAAACTATAGAACAAATGAAAAAAGAACTTGGTATGACTCAAGATTCGGATGTTGAAGATGGGTGGAGCACAGAGGAAATGGATCATAACCAGATAGACAACATCTCAGGATTGACCCTAAGTGAGGAGGAAGACTCtgatggttttgatgacgaggaagactctgatggttttaatgatgaggatgactctgattgggaagatgatgatgaggaCTCCGAGTTCTCAAAATTCATAAATGATGAGCATCCTTGA 2376 0.4465 MAFTNTCNLSEFSFNSSLSSLNPPRSSSHFLQSPFRIRTVAFASLPTPKPNISAPWLTKSPSPKTLPADDPPPRAAANKPQNAVERIVLRLRNVGLPTEEDQQQQQEEEEEEEENESPASNLPPVTGDERLVELLRREWVRPDAALAAGDDEEGEGTMLPWEREEEKEVVVVSDGEEGLRERRVRAPSLAELTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWSKEELVRLKFHEELARDMKKAHDIVERRTGGLVTWRSGSVMMVYRGIDYQGLDSRKEVVEKKKGEGFFVPDVSSGSLLKSGDSNATSSLDKSEVVVREQEQPKNVTEAEVEYNALLDELGPRFVEWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNELMSEEIKMLTGVLAEREELTKQVQDVEDKVRCRAIDAIPSEQVEAKVLAGTLAEFYEAQARWGREISSEEREKMMEEAAKAKTVKLVRQIEHKLSIAQVKKHRAEKLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPITLRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEQMKKELGMTQDSDVEDGWSTEEMDHNQIDNISGLTLSEEEDSDGFDDEEDSDGFNDEDDSDWEDDDEDSEFSKFINDEHP 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00230 791 ProSiteProfiles CRM domain profile. 192 288 IPR001890 GO:0003723
Cca08g00230 791 SUPERFAMILY YhbY-like 577 675 IPR035920 -
Cca08g00230 791 Coils Coil 696 723 - -
Cca08g00230 791 ProSiteProfiles CRM domain profile. 576 676 IPR001890 GO:0003723
Cca08g00230 791 SUPERFAMILY YhbY-like 193 282 IPR035920 -
Cca08g00230 791 MobiDBLite consensus disorder prediction 750 782 - -
Cca08g00230 791 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 36 785 IPR045278 GO:0000375|GO:0003729
Cca08g00230 791 MobiDBLite consensus disorder prediction 102 117 - -
Cca08g00230 791 Gene3D - 392 482 IPR035920 -
Cca08g00230 791 Gene3D - 192 293 IPR035920 -
Cca08g00230 791 Coils Coil 96 116 - -
Cca08g00230 791 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 36 785 - -
Cca08g00230 791 MobiDBLite consensus disorder prediction 48 127 - -
Cca08g00230 791 Gene3D - 578 680 IPR035920 -
Cca08g00230 791 ProSiteProfiles CRM domain profile. 391 495 IPR001890 GO:0003723
Cca08g00230 791 MobiDBLite consensus disorder prediction 736 791 - -
Cca08g00230 791 Pfam CRS1 / YhbY (CRM) domain 195 277 IPR001890 GO:0003723
Cca08g00230 791 Pfam CRS1 / YhbY (CRM) domain 393 463 IPR001890 GO:0003723
Cca08g00230 791 Pfam CRS1 / YhbY (CRM) domain 579 654 IPR001890 GO:0003723
Cca08g00230 791 SUPERFAMILY YhbY-like 393 462 IPR035920 -
Cca08g00230 791 Coils Coil 460 480 - -
Cca08g00230 791 SMART CRS1_YhbY_2 194 277 IPR001890 GO:0003723
Cca08g00230 791 SMART CRS1_YhbY_2 578 665 IPR001890 GO:0003723
Cca08g00230 791 SMART CRS1_YhbY_2 393 497 IPR001890 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00230 Cca-Chr8 3210061 3215237 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00230 - - gmx:100808013 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00230 08 3210061 3215237 Cca08g00230 08 3210061 3215237 ECH
Cca09g02706 09 52728018 52733408 Cca08g00230 08 3210061 3215237 PCT