Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02517 ATGCCAACCCAAACAATTCTGGTTACCGGCGGAGCCGGTTACATCGGTAGCCACACCGTCCTTCAGCTTCTCCTCGGCGGATACAAAGTCTTCGCCCTCGACAACTTCGACAATTCTTCCGAAGCCGCCATCGCCAGAGTCAAGACACTGGCTGGAGAATTCGCAAATAACCTTTCCTTTCAGAAGTTGGACCTACGGGACAGAGAGGGCCTCCAGAAAGTTTTTTCTTCCACAAAGTTTGATGCAGTCATACATTTTGCTGGActgaaagcagtaggtgaaagtgtggagaaaccactactctactttgacaacaacttgattgggacaatcgttctatttgaagtcatggctgcCAATGGATGCAAGAAGCTTGTGTTCTCATCTTCAGCAACTGTATATGGCTGGCCAGAGAAGGTTCCATGTACTGAGGAGTTCCCTTTGTCCGCAGCAAACCCATATGGACGAACCAAGCTTATCATTGAAGAAATTTGTCGTGATATCTACCGTGCAGATTCAAATTGGAAAATTATGCTGTTGAGATACTTCAACCCTGTTGGTGCACACCCTAGTGGTTATATAGGTGAGGATCCTCGTGGAATTCCAAACAACCTCATGCCCTTTGTTCAACAAGTTGCAGTTGGTAGACGCCCTGCATTGACAGTTTTTGGAAACGATTATAAAACAAGTGACGGCACTGGAGTTCGTGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCACTGCGTAAACTGGATGATACTAAAATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAAGGCTTTTGAAAAAGCCTCTGGAAAGAAAATTCCACTTGCAATGGCTGGTCGAAGACGGGGCGATGCTGAAGTTGTTTATGCATCAACTGAGAAAGCCCAAAAGGAACTTAATTGGAAGGCTAAATATGGTGTCGATGAGATGTGCCGCGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGTGGATCTGAAGATTCCTCCAAATGA 1053 0.4122 MPTQTILVTGGAGYIGSHTVLQLLLGGYKVFALDNFDNSSEAAIARVKTLAGEFANNLSFQKLDLRDREGLQKVFSSTKFDAVIHFAGLKAVGESVEKPLLYFDNNLIGTIVLFEVMAANGCKKLVFSSSATVYGWPEKVPCTEEFPLSAANPYGRTKLIIEEICRDIYRADSNWKIMLLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYKTSDGTGVRDYIHVVDLADGHIAALRKLDDTKIGCEVYNLGTGKGTSVLEMVKAFEKASGKKIPLAMAGRRRGDAEVVYASTEKAQKELNWKAKYGVDEMCRDQWNWASKNPYGYGGSEDSSK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02517 350 Gene3D - 194 335 - -
Cca09g02517 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 341 IPR036291 -
Cca09g02517 350 CDD UDP_G4E_1_SDR_e 5 334 IPR005886 GO:0003978|GO:0006012
Cca09g02517 350 TIGRFAM galE: UDP-glucose 4-epimerase GalE 6 340 IPR005886 GO:0003978|GO:0006012
Cca09g02517 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 1 346 - -
Cca09g02517 350 Pfam GDP-mannose 4,6 dehydratase 7 330 IPR016040 -
Cca09g02517 350 Gene3D - 6 275 - -
Cca09g02517 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 1 346 - -
Cca09g02517 350 PRINTS Nucleotide sugar epimerase signature 32 48 - -
Cca09g02517 350 PRINTS Nucleotide sugar epimerase signature 236 251 - -
Cca09g02517 350 PRINTS Nucleotide sugar epimerase signature 262 277 - -
Cca09g02517 350 PRINTS Nucleotide sugar epimerase signature 301 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02517 Cca-Chr9 50696872 50700683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02517 5 319 Miscellaneous Gene Families AT4G00110 28.485 8.40e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02517 K01784 - gmx:100812565 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01862 06 34061808 34067695 Cca09g02517 09 50696872 50700683 PCT