Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01862 ATGGCATCGCGCGTCAGCATTAACAACATCGCCTCCTCCGCACCGTATATTAATTCCCCTCATTTTCGGCCACCCCCTAATATTCCCAACTCTTCACTGCAAAACGCTGCGCATAAGCTCATGCTCCACAAAACCGTCCTTGTTACCGGCGGAGCCGGTTACATCGGTACCCACACCGTTCTTCAGCTTTTGCTCGGAGGCTTCAGAACCGTCGTCGTCGACAACCTCGACAATTCCTCCGAGCTTGCCATCCGCAGAGTCAGGGAGCTCGCCGGTGAATTTGGGAATAACCTCTCCTTTCACAAGGTGGACCTACGGGACAGAGATGCACTAGAGCAAATTTTTGGTTCGACACAGTTTGATGCTGTCATTCACTTTGCTGGActgaaagcagtaggagaaagtgtgcaaaaacctttactatactacaataataacttgactgggacaatcactctattggaagtcatggctgcccatggctgcaagaagCTTGTGTTCTCGTCTTCAGCTACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACCAAGCTTATCATTGAGGAAATTTGTCGTGATGTCCACAGTGCAGAGTCAGATTGGAAAATAATATTATTAAGATACTTCAACCCAGTTGGTGCACACCCTAGTGGTTATATCGGGGAGGATCCTCGTGGAATTCCTAATAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAACTGATGGCACCGGGGTTCGGGATTACATTCATGTAGTTGATTTAGCAGATGGACACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTCTGGAGATGGTTAGATCTTTTGAAAAGGCATCCGGAAAGAAAATTCCACTTGTAATGGCTGGCCGTAGACCTGGTGATGCTGAAATAGTTTATGCATCGACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGAGATCAGGAATCCACCGACTAA 1170 0.4197 MASRVSINNIASSAPYINSPHFRPPPNIPNSSLQNAAHKLMLHKTVLVTGGAGYIGTHTVLQLLLGGFRTVVVDNLDNSSELAIRRVRELAGEFGNNLSFHKVDLRDRDALEQIFGSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHSAESDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTTDGTGVRDYIHVVDLADGHIAALLKLDEPNIGCEVYNLGTGKGTSVLEMVRSFEKASGKKIPLVMAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGDQESTD 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01862 389 PRINTS Nucleotide sugar epimerase signature 72 88 - -
Cca06g01862 389 PRINTS Nucleotide sugar epimerase signature 276 291 - -
Cca06g01862 389 PRINTS Nucleotide sugar epimerase signature 302 317 - -
Cca06g01862 389 PRINTS Nucleotide sugar epimerase signature 341 358 - -
Cca06g01862 389 TIGRFAM galE: UDP-glucose 4-epimerase GalE 46 380 IPR005886 GO:0003978|GO:0006012
Cca06g01862 389 CDD UDP_G4E_1_SDR_e 45 374 IPR005886 GO:0003978|GO:0006012
Cca06g01862 389 Pfam GDP-mannose 4,6 dehydratase 47 370 IPR016040 -
Cca06g01862 389 PANTHER UDP-GLUCOSE 4-EPIMERASE 41 384 - -
Cca06g01862 389 Gene3D - 46 315 - -
Cca06g01862 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 382 IPR036291 -
Cca06g01862 389 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 41 384 - -
Cca06g01862 389 Gene3D - 234 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01862 Cca-Chr6 34061808 34067695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01862 45 359 Miscellaneous Gene Families AT4G00110 27.844 3.96e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01862 K01784 - gmx:100818509 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01862 06 34061808 34067695 Cca06g01862 06 34061808 34067695 ECH
Cca06g01862 06 34061808 34067695 Cca09g02517 09 50696872 50700683 PCT