Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02513 ATGGATGATTGTCCTGCAAAATTAAAAATCATCCCTGATCACTTTCAAGTTCCAACATCAAGTGTAGAGTCTCCTAGGAGTGGAACATCATCTATTACAGAACCTGGAACTGATCAATCTTCAAGGTCCTTGCGCCATCAGAGGACTCGAAGAAAATTAAGGACAGCTTTCATGTTGAATTTGTTTAGTCCACGGCGGCTTTCATGGGGTTCCACTACTGGAGGTCAGGAAAAGGTTGAGCTAACAGCTGCAGAAGTAGAGTCACTTCGATCGGAGCTTGCTGATATAGAGGAGAGGGAAGCTCACTTGAAAGCACAGTTGGAACATATTGATGAAGTTTTGCGGTCTGCTCGTCTATCTGGATATTTATACATTCGAACTAGATGGGCAGCACTACCAGGAGAACCTCCGCCTATAGATGATACTGAAGTAGATGATTGGCTTCCTCGTTTTGTTGTTCTCCATGGAACGTGTATATTTTTGTATTTGTCGTGTACAGATCTAAGCCCCCAGGACTCAACCCTTCTATCTGATATTGTTGAAGTAGGGAGTTTACCATGTTTTAAGCGAGAAGATGATGAAATTCAGTATGCCTTTTATATTTTAACTCGTCATGGATTGCGCTATGAGTGCTCCAGCAGTTCCAAGATACAGGTGGACTCTTGGTTATCAGCTTTACAAATACACCTTGTTTGGCATATAATTTTGAAAAAAGGAAGTGCAGATAGGAGATCACATTTTGCAAGATTTGGAGGGTTTGTAGACCTTATCTGTTGTAATCTGCAATGCCCTAGCACCCTTTTTGTGGCCATAGCCGTTGGTACAATTTGTAAATCACCATTTGGAAAGCAAGAGTTGAGGAAAGATTTGAGATGGAAACCATTTGAGGATAGAAGATGGCCTCACAGGTTTGCAAATCTGCTTCCAGAGCCGCGAGGTCCCTTCTCTCTGCTTCCAGGGCCTCTCAAGGACGTGCGGTTGCGGCTGGGGCCGCCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCTGCCGCTGTTACATTCAGCAACAAAGTGCCTCTTTTGGCCTCAAATTATGGGAGGAGCGGTTCTGGAAGTGGATCCGCATCATGGATTCCCGGAGCCCTTGCTCTTCCTGCTGCAGCTTACATGTTCCAAGATCAGGAGGTGCATGCAGCTGAGCTGGAGCGCACTTTCATTGCCATTAAGCCTGATGGAGTACAGAGAGGGCTGATTTCTGAGATTATATCTCGTTTTGAGCGGAAAGGGTACAAGCTTGTGGGAATTAAAGTAGTGATTCCTTCAAAGGAATTTGCCCAAAAGCACTACCACGACCTGAAAGAAAGACCCTTCTTTGATGGGCTGTGTAATTTCCTAAGTTCTGGCCCCGTTATTGCAATGGTGTGGGAAGGACAGGGAGTTATTTCCTATGGCCGAAAGCTAATTGGAGCCACAGATCCACAGAAATCAGAGCCTGGAACCATTAGGGGTGATCTGGCTGTTGTTGTTGGAAGAAATATCATCCATGGGAGCGATGGTCCAGAGACTGCGAAGGATGAGATTAAGTTGTGGTTTAAGCCAGAGGAGTTGGTTAGTTTCACTAGCAATGCAGAGAATTGGATTTATGGTAATTGA 1746 0.4147 MDDCPAKLKIIPDHFQVPTSSVESPRSGTSSITEPGTDQSSRSLRHQRTRRKLRTAFMLNLFSPRRLSWGSTTGGQEKVELTAAEVESLRSELADIEEREAHLKAQLEHIDEVLRSARLSGYLYIRTRWAALPGEPPPIDDTEVDDWLPRFVVLHGTCIFLYLSCTDLSPQDSTLLSDIVEVGSLPCFKREDDEIQYAFYILTRHGLRYECSSSSKIQVDSWLSALQIHLVWHIILKKGSADRRSHFARFGGFVDLICCNLQCPSTLFVAIAVGTICKSPFGKQELRKDLRWKPFEDRRWPHRFANLLPEPRGPFSLLPGPLKDVRLRLGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAVTFSNKVPLLASNYGRSGSGSGSASWIPGALALPAAAYMFQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVVIPSKEFAQKHYHDLKERPFFDGLCNFLSSGPVIAMVWEGQGVISYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNAENWIYGN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02513 581 Gene3D - 103 229 IPR011993 -
Cca09g02513 581 Gene3D - 428 581 IPR036850 -
Cca09g02513 581 PANTHER OS05G0595500 PROTEIN 1 229 - -
Cca09g02513 581 Hamap Nucleoside diphosphate kinase [ndk]. 432 567 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca09g02513 581 SUPERFAMILY PH domain-like 111 228 - -
Cca09g02513 581 Coils Coil 79 113 - -
Cca09g02513 581 Pfam Nucleoside diphosphate kinase 433 566 IPR034907 -
Cca09g02513 581 PRINTS Nucleoside diphosphate kinase signature 479 498 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca09g02513 581 PRINTS Nucleoside diphosphate kinase signature 499 516 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca09g02513 581 PRINTS Nucleoside diphosphate kinase signature 520 536 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca09g02513 581 PRINTS Nucleoside diphosphate kinase signature 435 457 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca09g02513 581 PRINTS Nucleoside diphosphate kinase signature 543 562 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca09g02513 581 CDD NDPk_I 433 562 - -
Cca09g02513 581 SUPERFAMILY Nucleoside diphosphate kinase, NDK 432 579 IPR036850 -
Cca09g02513 581 PANTHER OS05G0595500 PROTEIN 1 229 - -
Cca09g02513 581 ProSiteProfiles PH domain profile. 116 231 IPR001849 -
Cca09g02513 581 CDD PH 119 226 - -
Cca09g02513 581 ProSitePatterns Nucleoside diphosphate kinases active site. 543 551 IPR023005 -
Cca09g02513 581 MobiDBLite consensus disorder prediction 17 42 - -
Cca09g02513 581 SMART ndk_5 432 569 IPR034907 -
Cca09g02513 581 SMART PH_update 117 233 IPR001849 -
Cca09g02513 581 MobiDBLite consensus disorder prediction 15 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02513 Cca-Chr9 50646218 50655556 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02513 K00940 - gmx:113002366 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01854 06 33969069 33983761 Cca09g02513 09 50646218 50655556 PCT