Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01854 ATGTTGAAGTTGTTTACTTTTCGGGGGCTGCCATGGTTCCCCAGCACTGGTGGTCAGGAAAAGGTTGAGCTAACAGCTGCTGAAGTAGAGTCACTACGATCAGAACTTGCTGATATAGAAGAAAGGGCAGCTCAATTGAGAGCTCAGTTGGAAAATGTTGATGAAATTTTGCGGTCAGCTTGTCTATCTGGTTATTTGTACATTCGAACAAGATGGACAGCACTTCCAGGAGAACCTCCACCTATAGATGATTCTGATGTAGATGATTGGCTTCCTCGCTTTGTTGTTCTTCATGGTGAATGCCTATACTTTTATTTGTTATGTACAGATCTAAGTCCTCAGGATTCAACTCTCCTATCTGATATTGTTGAAGTAGAGCAACTACCAAGTTTTAAGCGTGAAGATGATGAGATGCGATACGCCTTTTATATTTTAACTCGTCATGGTTTACGATATGAATGCTCAAGCAGTTCTAAGATACAGGTTGACTCGTGGTTATCAGCTTTACATTCTGACTGTAAATTGGAATCTGATAAATCAACTCCCAATGTGCTAATCAAAACCCTAACTGAGTTCGATTGCAACACCTCCTCACTTCTTCAAATCCACCTGCGCCGCCGAAGAATGGCAGCCAAACCCCTTACGACTGAGGCAATTGCGCTTACAGAAAAGAAGATGGACATGACACTAGATGACATAATCAAAATGTCTAAGAATACGAAGAATAGGAAGCAAAGACGGGTTCCTAACAAAAGTCAAAAGTTTTCGAACAATTTTACTCAAGACAAGTCTTCAAAGGTCCTGCGTTATATGGAATCAAGATCTTCTCTTAGACAGGGGGCTCTTGCAAAAAGAAGGACTAATTTCCGTGGAAACCAATTTCCAGTTGCAGTTGAAGTTGCGCGAAAAGCTGTTACGGCTCCTCTGCGCAATAGAGTTCCTAATCGTAATAGGGTCGCTAACTGGAACAAAGCAAGATTTCGAGTTCCTGTGGGTCAGAGAAGGACTGCTAACGGAGGCTTTGTTGCAAAGCAACAACCGGTTCGCTCCCCTCAGAAGCAGCCGGAGAATGTAGATATAATGACAAAGCAGAAGCCTCAGACGTTGGATTCACTGTTTGCAAACATGAAGGAGCAAAGAATGAAAGTTTTGTCAATGCAGAATAATGCAGTGCAGCGCAATGGAGGTGGAAATAGGAGGCTCCCTTGGGGAAGAGGTTTGACACAAAAGATTTCTTCCGGTGGCTTCTTAAAGAAGACATTATTCAACTTCGCATATTCATATAAGCTGAATAACATGAAGAAAGGGATTACACATGGAGAGGCATCTCCACTTCTTGATAAAATTGTGTTTGATAAGATAAAGCAAGGTTTAGGGGGTAGGGTACGTCTTATTTTGTCTGGAGCAGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTTGTGACTTGTGCTCATGTCCTACAAGGATATGGTATAATGCAGGAGTTGTGA 1497 0.4222 MLKLFTFRGLPWFPSTGGQEKVELTAAEVESLRSELADIEERAAQLRAQLENVDEILRSACLSGYLYIRTRWTALPGEPPPIDDSDVDDWLPRFVVLHGECLYFYLLCTDLSPQDSTLLSDIVEVEQLPSFKREDDEMRYAFYILTRHGLRYECSSSSKIQVDSWLSALHSDCKLESDKSTPNVLIKTLTEFDCNTSSLLQIHLRRRRMAAKPLTTEAIALTEKKMDMTLDDIIKMSKNTKNRKQRRVPNKSQKFSNNFTQDKSSKVLRYMESRSSLRQGALAKRRTNFRGNQFPVAVEVARKAVTAPLRNRVPNRNRVANWNKARFRVPVGQRRTANGGFVAKQQPVRSPQKQPENVDIMTKQKPQTLDSLFANMKEQRMKVLSMQNNAVQRNGGGNRRLPWGRGLTQKISSGGFLKKTLFNFAYSYKLNNMKKGITHGEASPLLDKIVFDKIKQGLGGRVRLILSGAAPLSAHVEGYLRVVTCAHVLQGYGIMQEL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01854 498 PANTHER OS05G0595500 PROTEIN 1 185 - -
Cca06g01854 498 SMART PH_update 60 176 IPR001849 -
Cca06g01854 498 PANTHER OS05G0595500 PROTEIN 1 185 - -
Cca06g01854 498 CDD PH 62 169 - -
Cca06g01854 498 SUPERFAMILY PH domain-like 55 170 - -
Cca06g01854 498 Coils Coil 22 56 - -
Cca06g01854 498 Gene3D - 51 179 IPR011993 -
Cca06g01854 498 MobiDBLite consensus disorder prediction 239 258 - -
Cca06g01854 498 ProSiteProfiles PH domain profile. 59 174 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01854 Cca-Chr6 33969069 33983761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01854 406 496 Acyl Lipid Metabolism Gene Families AT1G64400 69.231 1.16e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01854 - K00940 ccaj:109810881 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01854 06 33969069 33983761 Cca06g01854 06 33969069 33983761 ECH
Cca06g01854 06 33969069 33983761 Cca09g02513 09 50646218 50655556 PCT