Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02494 ATGGATAAAGAATTGGAGGTTGGTGGATGTGTGCAACATCAAAGCAAAGATGATGGACATTCACTAAACCCTCAATTCCCCAAAACATTAAAACCCCAAGAATATAGTGACCTTCCACTAGGTAAGAATGTGCTTGAAGCCATCAGCCATGTTGCCGTGCGGGAGCATCTGCATCCAAGTCTCTTTTCGGATGATGCTGGTGGCATGGTTGAAGAATTAAAGGTGAAAAGTTACAACGGTACTAACCTGGTTATTGGTACTTCCAACAATCCAGAGCTTTTGCATAATAGTCAGAGTCGATGGCGGCATAATTATCAGCTGGTTGGTGATTCAGGCATGGGAAGTGATTGCATAATAGCCAGAAATAGTCTTCAAGCTACATCTAGTGCTTGGGGGGATATATTGGCTAGAAGATCAGTCAATGATGATCAGGGTGATGTCATGCAGCACTTGTCCAGTGATGTGCATAAAGCTGCACTTAAAGAGGATGAAGGTGATGCTCGTGAAGGAATACAAACAAAAATTACAGATAAACCAGGATTTGCAGAGTACCTTATTAGAAGTACATCGAAGGGAAAGGGTATTGTATGTAAAGGTCCATCTTCTAATGCATTATTGGGCTATGGTTCAAAGACTGCAAAGTCTCCTCATAATGCTACAGTGCCAGGATCCGGTGAGTCTGACTGTGATGGTGTGACTTTGAGAGAATGGTTGAAATCTAGGCACCACAAAGGGAGCAAAACGGAGCATTTAAGCATATTCAGAAAAATTGTGGATTTGGTGGATGGTTTTCACTCCCAGGGAATTGCAATGCACAATCTTTACCCTTCTTATATTAAATTGTCACCATCAAACCAGGTTATGTACCTTGGGTTGCCTGATCAGAATCAGACCTTATATAGTGTTGTAAATTCTGAAGTTCTTCAGCTAGAGAATTCTTTTAATAGAAAAAGGCTGTCAGAGAAGGTAATTTCTCCTCCTAAGTTGCGGTCAAAGAAACATAAATTCAATGAAAATGTTAGAGTTTCTGGTGATTGGAGTCAATGCCCTCCAAGGACCGACTTGTATCTTCAAATTGCCAATGATATTAAAATCAATGCAGTGGGATCACAAGATATCCAATATTCTGAACATAATATTTGGAGATTGTCTCGCATCCCTCACATATCTAATGCAGGTCAATTGCAATTGACTTCTTTAAATGAAAGATTGGAAGATAAATGGTATGCAAGTCCTGAGGGTGGTTGCGCAACATCATCAAATATCTACTGTCTCGGAGTCCTTTTCTTTGAGTTACTTAATCATTTTGAATCAGAAAAGGCACATATTGCTGCAATGTCTGATCTTCGCTGTAGGATCCTTCCTTCAGTTTTCCTATCAGAGTATCCTACAGAAGCCGGATTTTGCCTTTGGATGTTGCATCCTGAACCATCATCACGTCCAACAATAAGGGAGATCCTACAATCTGAAGTGATTAATGGAATGCAGGAGGTGTACAGTAAGGAATTATCATCAAGTCTTAACCAAGATGATGCAGAATCAGAATTGCTATTGGATTTCCTCATCTCCCTAAAAGAGAAGCAGCACATGGAAGCCAACAAATTGGCAGAAAAAATCAGATGCTTGGAATCAGATATAGAAGAGGTGGAGAGGAGACATGACTTGAGAAAATCCTTGCTTCCCTCAAGCTTGCAGAACAACTCCTTTTGTCAAATAGAGAGTGCGTCTCTTCGCAAAGAACCTTCAAGTTCCGAAACATTACCACCAGTACGTACAATTTCTAATGCAAATGAGCAGAGATTGATGAAAAATAGGTGCCTACTAGAAAATGCATACTTTTCCATGAGATCCAAAATTAAACTTCCTGAAACAGACACTGCAATGCACCTAGATAAAGATATACTGAAAAATCGTGACAACTGGTGCGTAGCTCAAAAAGACATGGAACAACATAAGACGACAGATACTTTAGGAGCTTTCTTTGACAGTTTGTGCAAGTATGCACGTTATAGCAAGTTTAAATTGCGGGGCACACTAAGAAATGCTGGTTTTAACAATCCTGCAAATGTAATCTGCTCTATGAGTTTTGATAGGGATGAAGACTATTTTGCTGCTGCTGGGATATCAAGGAAAATAAACATTTTTTATTTCAATGCACTTTTCAATGACTCTGTCAATATCCATTATCCTGTAGTTGAGATGTCAAACAGATCAAGGCTCAGTAGTGTTTGCTGGAATAACTACATCCAGAACTATCTTGCCTCCACAGACTATGATGGTGTAGTCAAGCTATGGGATGCCAATACAAGCCAAGGGTTTTCTAGATTCACCGAACATGAAAAGAGGGCCTGGTCTGTTGATTTCTCTCTGGTATGCCCTACTAAATTTGCCAGCGGGAGTGATGATTGTTCTGTGAAGCTGTGGAGTATCAATGAGAAGAACAGTTTAGGCACAATCAGGAACGTTGCTAATGTCTGTAGCGTCCAGTTCTCTACTCATTCCTCTCATTTGCTGGCCTTTGGATCTGCGGATTACTCTGCTTATTGCTATGATCTTCGCAATCTTAGAAGCCCTTGGTGTGTGTTGACTGGCCATCGTAAAGCTGTAAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCAGCATCAACGGATAATACATTGAAGATCTGGAATCTCAATAAAACCTCTCCTGAGGGTCCATCTACTAGTGCCTGCAGCTTAACCCTGTCAGGCCATACTAATGAGAAGAATTTTGTGGGTTTATCAGTTGCTGATGGATATATAGCATGTGGTTCAGAAACAAATGAGGTTTATGCCTACTATAAATCTCTTCCCATGCCAGTGACTTCTCACAAGTTTGGCACCATTGATCCTATTTCTGGTAAAGAGACAGATGATGACAATGGTCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCGGACATGGTTGTTGCAGCCAATTCAAGTGGATGTATAAAAGTTCTACAGATGGTTTGA 3006 0.4045 MDKELEVGGCVQHQSKDDGHSLNPQFPKTLKPQEYSDLPLGKNVLEAISHVAVREHLHPSLFSDDAGGMVEELKVKSYNGTNLVIGTSNNPELLHNSQSRWRHNYQLVGDSGMGSDCIIARNSLQATSSAWGDILARRSVNDDQGDVMQHLSSDVHKAALKEDEGDAREGIQTKITDKPGFAEYLIRSTSKGKGIVCKGPSSNALLGYGSKTAKSPHNATVPGSGESDCDGVTLREWLKSRHHKGSKTEHLSIFRKIVDLVDGFHSQGIAMHNLYPSYIKLSPSNQVMYLGLPDQNQTLYSVVNSEVLQLENSFNRKRLSEKVISPPKLRSKKHKFNENVRVSGDWSQCPPRTDLYLQIANDIKINAVGSQDIQYSEHNIWRLSRIPHISNAGQLQLTSLNERLEDKWYASPEGGCATSSNIYCLGVLFFELLNHFESEKAHIAAMSDLRCRILPSVFLSEYPTEAGFCLWMLHPEPSSRPTIREILQSEVINGMQEVYSKELSSSLNQDDAESELLLDFLISLKEKQHMEANKLAEKIRCLESDIEEVERRHDLRKSLLPSSLQNNSFCQIESASLRKEPSSSETLPPVRTISNANEQRLMKNRCLLENAYFSMRSKIKLPETDTAMHLDKDILKNRDNWCVAQKDMEQHKTTDTLGAFFDSLCKYARYSKFKLRGTLRNAGFNNPANVICSMSFDRDEDYFAAAGISRKINIFYFNALFNDSVNIHYPVVEMSNRSRLSSVCWNNYIQNYLASTDYDGVVKLWDANTSQGFSRFTEHEKRAWSVDFSLVCPTKFASGSDDCSVKLWSINEKNSLGTIRNVANVCSVQFSTHSSHLLAFGSADYSAYCYDLRNLRSPWCVLTGHRKAVSYVKFLDSETLVSASTDNTLKIWNLNKTSPEGPSTSACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYAYYKSLPMPVTSHKFGTIDPISGKETDDDNGQFVSSVCWRGKSDMVVAANSSGCIKVLQMV 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02494 1001 SMART WD40_4 951 999 IPR001680 GO:0005515
Cca09g02494 1001 SMART WD40_4 812 851 IPR001680 GO:0005515
Cca09g02494 1001 SMART WD40_4 727 766 IPR001680 GO:0005515
Cca09g02494 1001 SMART WD40_4 855 893 IPR001680 GO:0005515
Cca09g02494 1001 SMART WD40_4 769 809 IPR001680 GO:0005515
Cca09g02494 1001 SMART WD40_4 904 943 IPR001680 GO:0005515
Cca09g02494 1001 SMART WD40_4 672 716 IPR001680 GO:0005515
Cca09g02494 1001 Pfam WD domain, G-beta repeat 776 809 IPR001680 GO:0005515
Cca09g02494 1001 Pfam WD domain, G-beta repeat 861 893 IPR001680 GO:0005515
Cca09g02494 1001 PANTHER PROTEIN SPA1-RELATED 2 32 1001 IPR044630 GO:0009640
Cca09g02494 1001 MobiDBLite consensus disorder prediction 1 25 - -
Cca09g02494 1001 ProSiteProfiles Trp-Asp (WD) repeats profile. 862 895 IPR001680 GO:0005515
Cca09g02494 1001 ProSiteProfiles Trp-Asp (WD) repeats profile. 776 818 IPR001680 GO:0005515
Cca09g02494 1001 PANTHER PROTEIN SPA1-RELATED 2 32 1001 - -
Cca09g02494 1001 Gene3D Transferase(Phosphotransferase) domain 1 229 504 - -
Cca09g02494 1001 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 862 895 - -
Cca09g02494 1001 ProSitePatterns Trp-Asp (WD) repeats signature. 880 894 IPR019775 -
Cca09g02494 1001 SUPERFAMILY WD40 repeat-like 685 998 IPR036322 GO:0005515
Cca09g02494 1001 SUPERFAMILY Protein kinase-like (PK-like) 229 497 IPR011009 -
Cca09g02494 1001 Coils Coil 525 552 - -
Cca09g02494 1001 Gene3D - 660 1001 IPR015943 GO:0005515
Cca09g02494 1001 ProSitePatterns Trp-Asp (WD) repeats signature. 753 767 IPR019775 -
Cca09g02494 1001 PRINTS G protein beta WD-40 repeat signature 753 767 IPR020472 -
Cca09g02494 1001 PRINTS G protein beta WD-40 repeat signature 796 810 IPR020472 -
Cca09g02494 1001 PRINTS G protein beta WD-40 repeat signature 880 894 IPR020472 -
Cca09g02494 1001 ProSiteProfiles Trp-Asp (WD) repeats profile. 733 775 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02494 Cca-Chr9 50470390 50478468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02494 796 942 Miscellaneous Gene Families AT5G08390 29.530 1.72e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02494 K16240 - gmx:100776980 1618.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01842 06 33829067 33836454 Cca09g02494 09 50470390 50478468 PCT