Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01842 ATGGATGAAGAATTGGTTGATGAGGCAACCCAATTAGAGGTTGCTGAGGATTCACAGCGCCAGAACAAAGAGGACAATGAGTATTCACCCAACACCGAATGCCGAAAAACCTTAAAATCCCAAGAAGTCTTTACCCCTGCGAAGCAGGACTACTCTCAGATACCACCTCGGGAATATGATGACATTCTACAGGGTAAAAATGTAGTTGAAGGTATCAACCATGCAAATACATCACAGCATCCTCGTGTAAGCCTTTTCATGGATGATGCCGATGTTATGGTTGAAGAATTAACAGTAAAAAGTTACAATGGCTCAAGCTTGGATATCGGTACTTCAAACAACCGAGAGCAAATGTATAGTCGACAGAACCATTGGCAGAATTTTTATCAGCTAGCAACTAATTCAGGAATCGGAAATTCACTAAGTGATATTGGAACCAGAAACAGTGTCCAGGCTACATCTAGTGCTCGGGAGGATATTGGATCCTCATCTTTCCCAGAGATGTTAGCTAGAAAATCTCTCAGTGATGGCCAGAGCAATGTCATGGAGCACCTGGCAGCTGCTGAAAACAAAGAGGGTGCAGGTGATGTTCGTCAAGGAATACGGACAAAAATTATATCCCAATCAGGGTTTGCTGAGTTTTTCATAAAAAATACACTGAAGGGTAAGGGTATTGTATATAAAGGTCCATCTTATGATGCCTTCTGTGCTCAGTCTAGAGAGCAAAACCGGATGAAGACTGGCATTGATGCAGATCAAAATCAGATGAGGACTGGCATTGGCACAGATCAGAATCAGATGAAGACTGGAATTGGCACAGATCAAAATCAGACGAAGACTGGCTTTGGCACAGATCAGAGTCAGATGAAGACTGGCATTGGCACAGATCAGAATCCGATGAAGAATGGCATTGGTACAGATCAGAAACAGATGAAGACTGGTATTGGCACTCACATGAACTCTAATCAATCAGCGGGATGTGGTTCCAAAACTGCAAAGTTTACTGCTTATGGTGGTGCAATGCCTAGATCTGGCAGGTCTGAATGTGATGGTGTGACTTTGAGAGAATGGTTGAAACATGGGCACCACAAAGCAAGCAAAGTTGAAAATTTGAATATATTTAGGAAGATTGTGGATTTGGTGGACAACTCTCACTCTCAGGGAGTTGCATTGCATAACCTTTGTCCATCTTATATTAAACTCACGCCATCAAACCAGGTCATGTACCTCGGTTTACCTGTTCAAAAACAGATGGTGGATAGTGTTGTAAATTCTGAGGTTGTTCACTCAGATAATTCTTTTATTAGAAAAAGGCTGTCGGAGCAAGTAAGATTTCCCTCTCTTGATATGGGGTCAAAGAAACAAAAATTTAATGAGAATTTGAGAGCCACTGGTGGTCTTGATACCGCAAGTGATAGGACACTTCATAGTCATACAGTTGGATCACAAGATTATTGCAATGAATACGAGGAAGATACCCAATTCTCTAAATATAACATTGGAAGAATGTCTAGCATCCCTCGTGTATCTAATGCAAATCAAATGCCATTGACTTCATCTGAAAAATTGGAAAATAAATGGTATGTGAGTCCTGAAGGAGGTTACACAACATCATCAAATATCTACTGCCTTGGTGTGCTCCTTTTCGAGTTACTTGGCCATTTTGACTCTGAAAGAACACATATTGCAGCAATGTCTGATCTTCGTCATAGGATTCTTCCTCCAGTTTTCCTATCAGAAAATCCTAAGGAAGCTGGCTTTTGTCTTTGGCTGCTGCATCCTGAACCATCATCACGTCCAACAACAAGGGAAATCCTACAATCTGAATTGATTAATGGATTGCAAGAGTTATATAGTGAGGAAATGTCATCAAATATTGACCAAGAAGATGCAGAATCAGAATTGTTATTGCATTTCCTCGTCCTGTTAAAAGAGCAGAAGCAGAACACTGCCTTCAAACTGGTAGAAGAAATCAAGTGCTTGGAATCAGATATAGAAGAGGTGGAGAGGAGGCATGACTCAAAAAATTCCTTGGTTTCCTCTGGTTTGCAGAATGATTACTCTTGTCAGATAGAGACTATGTCTCTTAAAAAGGAACCTTTGAGTTTAGAAATGCTGCCCTCAATGTCCCCAATCTCTAATTCAAATGAATTAAGATTGATGAGAAATATGTGCCATCTTGAAAGTGCTTATTTTTCCATGAGATCCAAACTTCAGCTTTCTGAAACAGATGCTACAACCCACCCAGATAAAGATATACTAAGAAATCGTGAGAACTGGTATGTGACCCAAAAAGGAGAGGAACAACCTAAAAGCAAAGATACTTTAGGGACATTCTTTGATGGTTTATGCAAGTATGCACGTTATTGCAAGTTTGAAGTGCGGGGTGTACTAAGAAATGCTGATTTTAGCAATCCTGCAAACGTAATTTGCTCTCTAAGCTTTGATCGTGATGAGGATTACTTTGCTTCTGCCGGGATATCTAAGAAAATAAAAATATTCGAGTTTAGTGCACTTTGCAATGATTCTGTTGATATCCATTATCCTGCTGTTGAGATGTCAAACAGATCAAAACTCAGCTGTGTTTGCTGGAATAACTATATTAAGAACTATCTTGCTTCTACAGATTATGACGGTATAGTGAAGTTATGGGATGCTAGTACCGGTCAAGAATTTTCTCAATTCACTGAACATGAGAAGAGGGCTTGGTCTGTTGACTTCTCTGCAGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGCGAGAAGAACTGTTTGGGCACAATCAGGAGTGTTGCTAATGTCTGCTGTGTTCAATTCTCTGCTCATTCCTCCCATTTGCTGGCCTTTGGATCTGCAGATTACTCAACATATTGTTATGATCTTCGCAATCTTAGAAGTCCTTGGTGTGTATTGGCTGGCCATCGTAAAGCTGTGAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCTGCTTCTACTGATAATACGTTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTGCGTCCATCAATGCTTGCAGCTTAAGCCTGTCAGGACATACTAATGAGAAGAATTTCGTGGGTCTGTCAGTGGCTGATGGATATATCGCATGTGGTTCAGAAACAAATGAGGTTTACAGCTACTATAGATCGCTTCCCATGCCAATCACTTCGCACAAATTCGGGTCCATTGATCCCATTTCCGGTAAAGACACTGATGAGGACAATGGTCAATTTGTTTCAAGTGTGTGCTGGAGAGGGAAGTCAGACATGCTTATTGCGGCCAATTCAAGTGGATGTGTAAAAGTGTTACAGATGGTTTAA 3363 0.4077 MDEELVDEATQLEVAEDSQRQNKEDNEYSPNTECRKTLKSQEVFTPAKQDYSQIPPREYDDILQGKNVVEGINHANTSQHPRVSLFMDDADVMVEELTVKSYNGSSLDIGTSNNREQMYSRQNHWQNFYQLATNSGIGNSLSDIGTRNSVQATSSAREDIGSSSFPEMLARKSLSDGQSNVMEHLAAAENKEGAGDVRQGIRTKIISQSGFAEFFIKNTLKGKGIVYKGPSYDAFCAQSREQNRMKTGIDADQNQMRTGIGTDQNQMKTGIGTDQNQTKTGFGTDQSQMKTGIGTDQNPMKNGIGTDQKQMKTGIGTHMNSNQSAGCGSKTAKFTAYGGAMPRSGRSECDGVTLREWLKHGHHKASKVENLNIFRKIVDLVDNSHSQGVALHNLCPSYIKLTPSNQVMYLGLPVQKQMVDSVVNSEVVHSDNSFIRKRLSEQVRFPSLDMGSKKQKFNENLRATGGLDTASDRTLHSHTVGSQDYCNEYEEDTQFSKYNIGRMSSIPRVSNANQMPLTSSEKLENKWYVSPEGGYTTSSNIYCLGVLLFELLGHFDSERTHIAAMSDLRHRILPPVFLSENPKEAGFCLWLLHPEPSSRPTTREILQSELINGLQELYSEEMSSNIDQEDAESELLLHFLVLLKEQKQNTAFKLVEEIKCLESDIEEVERRHDSKNSLVSSGLQNDYSCQIETMSLKKEPLSLEMLPSMSPISNSNELRLMRNMCHLESAYFSMRSKLQLSETDATTHPDKDILRNRENWYVTQKGEEQPKSKDTLGTFFDGLCKYARYCKFEVRGVLRNADFSNPANVICSLSFDRDEDYFASAGISKKIKIFEFSALCNDSVDIHYPAVEMSNRSKLSCVCWNNYIKNYLASTDYDGIVKLWDASTGQEFSQFTEHEKRAWSVDFSAVCPTKFASGSDDCTVKLWSISEKNCLGTIRSVANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGASINACSLSLSGHTNEKNFVGLSVADGYIACGSETNEVYSYYRSLPMPITSHKFGSIDPISGKDTDEDNGQFVSSVCWRGKSDMLIAANSSGCVKVLQMV 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01842 1120 MobiDBLite consensus disorder prediction 255 302 - -
Cca06g01842 1120 SUPERFAMILY Protein kinase-like (PK-like) 349 619 IPR011009 -
Cca06g01842 1120 MobiDBLite consensus disorder prediction 13 32 - -
Cca06g01842 1120 ProSitePatterns Trp-Asp (WD) repeats signature. 872 886 IPR019775 -
Cca06g01842 1120 Gene3D Transferase(Phosphotransferase) domain 1 349 622 - -
Cca06g01842 1120 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 981 1014 - -
Cca06g01842 1120 ProSiteProfiles Trp-Asp (WD) repeats profile. 895 937 IPR001680 GO:0005515
Cca06g01842 1120 SMART WD40_4 974 1012 IPR001680 GO:0005515
Cca06g01842 1120 SMART WD40_4 931 970 IPR001680 GO:0005515
Cca06g01842 1120 SMART WD40_4 1079 1118 IPR001680 GO:0005515
Cca06g01842 1120 SMART WD40_4 888 928 IPR001680 GO:0005515
Cca06g01842 1120 SMART WD40_4 791 835 IPR001680 GO:0005515
Cca06g01842 1120 SMART WD40_4 1023 1062 IPR001680 GO:0005515
Cca06g01842 1120 SMART WD40_4 845 885 IPR001680 GO:0005515
Cca06g01842 1120 MobiDBLite consensus disorder prediction 1 38 - -
Cca06g01842 1120 Coils Coil 651 678 - -
Cca06g01842 1120 Gene3D - 779 1120 IPR015943 GO:0005515
Cca06g01842 1120 PANTHER PROTEIN SPA1-RELATED 2 1 1120 IPR044630 GO:0009640
Cca06g01842 1120 ProSiteProfiles Trp-Asp (WD) repeats profile. 981 1021 IPR001680 GO:0005515
Cca06g01842 1120 PRINTS G protein beta WD-40 repeat signature 872 886 IPR020472 -
Cca06g01842 1120 PRINTS G protein beta WD-40 repeat signature 915 929 IPR020472 -
Cca06g01842 1120 PRINTS G protein beta WD-40 repeat signature 999 1013 IPR020472 -
Cca06g01842 1120 ProSitePatterns Trp-Asp (WD) repeats signature. 999 1013 IPR019775 -
Cca06g01842 1120 PANTHER PROTEIN SPA1-RELATED 2 1 1120 - -
Cca06g01842 1120 SUPERFAMILY WD40 repeat-like 804 1117 IPR036322 GO:0005515
Cca06g01842 1120 ProSiteProfiles Trp-Asp (WD) repeats profile. 852 894 IPR001680 GO:0005515
Cca06g01842 1120 Pfam WD domain, G-beta repeat 980 1012 IPR001680 GO:0005515
Cca06g01842 1120 Pfam WD domain, G-beta repeat 890 928 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01842 Cca-Chr6 33829067 33836454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01842 871 957 Miscellaneous Gene Families AT5G08390 31.111 7.97e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01842 K16240 - gmx:100778303 2015.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01842 06 33829067 33836454 Cca06g01842 06 33829067 33836454 ECH
Cca06g01842 06 33829067 33836454 Cca09g02494 09 50470390 50478468 PCT