Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02465 ATGGGGTTGATGGCCGTTGACCAAACTCACTTGTTGTCTAAGATGGCCACCGGGGATGGGCATGGTGAAGCATCCTCATACTTTGATGGATGGAAGGCTTATGATAAAAACCCCTTTCATCCCACTCAGAATCCTAATGGGGTTATCCAAATGGGTCTTGCAGAAAATCAGCTTACTTCTGATTTGGTTGAAGATTGGATACTGAATAACCCACAGGCTTCTATTTGCACTCCAGAAGGAATAAATGATTTCAGAGACATAGCTAACTTTCAGGATTATCATGGTCTACCCGAGTTTAGAAATGCTGTGGCTAAATTCATGTCTAGAACAAGAGGAAACAGAGTCAAGTTTGACCCTGACCGTATCGTTATGAGCGGTGGAGCAACTGGAGCACACGAGGTCACTGCCTTTTGTTTGGCAGATCCCGGTGACGCATTTTTGGTGCCTATACCCTATTATCCAGGATTTGACCGGGATTTGAGATGGAGAACAGGAGCTCAACTTGTTCCAGTTATGTGCGATAGCTCAAACAATTTCAAGTTGACAAGGCAAGCATTGGAAGATGCTTATGAGAAAGCCAAAAGGGATAACATAAGAGTAAAGGGTTTACTCATAACCAATCCATCAAATCCATTAGGCACAATCATGGACAGAAACACACTAAGAACAGTGGTGAGCTTCATCAACGAGAAGCGTATCCACCTTGTGTGTGATGAAATATATGCTGCAACAGTTTTCGGCCACCAAAATTTCATAAGCATAGCTGAAATATTGGAGGAAGACACAGACCTAGAATGTGACCGCAACTTGGTTCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGCTTCAGAGTTGGCATCATATACTCTTACAACGACGCTGTTGTCAATTGTGCACGCAAAATGTCAAGCTTTGGGTTGGTGTCTACACAGACTCAGTATCTTTTAGCATCAATGCTATCTGATGATGAGTTTGTGGAAAGGTTTCTGGCAGAGAGTGCCAATAGGTTGGCACAAAGGTACAGGGTTTTCACTGGGGAATTGATGAACGTTGGCATAAAGTGCTTGCAAAGCAATGCTGGTCTCTTTGTGTGGATGGATTTGAGGCACCTTCTCAAGACGCCAACTTTAGAGTCTGAAATGGAGCTTTGGAGAGTGATCATTCATGAAGTTAAGATCAACGTTTCACCTGGATCTTCCTTTCATTGCACTGAGCCAGGGTGGTTTAGGGTGTGCTATGCTAACATGGAGGACATGGCTGTGCAAATTGCTTTGCAAAGGATTCGCACCTTTGTGCTTCAAAACAAGGAGGTCATGGTGGCTAACAAGAAACAATGTTGGCAGAGTAGTTTGAGGCTGAGCCTCAGAAAATCAAGAAGGTTTGAAGAAATCTCGATGTCACCTCACTCCCCCATACCTCAGTCTCCTCTAGTTAAAGCCACAATTTGA 1458 0.4362 MGLMAVDQTHLLSKMATGDGHGEASSYFDGWKAYDKNPFHPTQNPNGVIQMGLAENQLTSDLVEDWILNNPQASICTPEGINDFRDIANFQDYHGLPEFRNAVAKFMSRTRGNRVKFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPIPYYPGFDRDLRWRTGAQLVPVMCDSSNNFKLTRQALEDAYEKAKRDNIRVKGLLITNPSNPLGTIMDRNTLRTVVSFINEKRIHLVCDEIYAATVFGHQNFISIAEILEEDTDLECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLLASMLSDDEFVERFLAESANRLAQRYRVFTGELMNVGIKCLQSNAGLFVWMDLRHLLKTPTLESEMELWRVIIHEVKINVSPGSSFHCTEPGWFRVCYANMEDMAVQIALQRIRTFVLQNKEVMVANKKQCWQSSLRLSLRKSRRFEEISMSPHSPIPQSPLVKATI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02465 485 CDD AAT_like 89 432 - -
Cca09g02465 485 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Cca09g02465 485 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
Cca09g02465 485 Coils Coil 176 196 - -
Cca09g02465 485 Pfam Aminotransferase class I and II 49 431 IPR004839 GO:0009058|GO:0030170
Cca09g02465 485 Gene3D - 71 325 IPR015421 GO:0003824
Cca09g02465 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Cca09g02465 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Cca09g02465 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Cca09g02465 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Cca09g02465 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Cca09g02465 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Cca09g02465 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Cca09g02465 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Cca09g02465 485 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 4 446 - -
Cca09g02465 485 SUPERFAMILY PLP-dependent transferases 21 435 IPR015424 -
Cca09g02465 485 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 4 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02465 Cca-Chr9 50133571 50136700 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02465 K20772 - gmx:100037458 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01816 06 33577230 33580100 Cca09g02465 09 50133571 50136700 PCT