Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01816 ATGGAGCTAATGAGCGTGAACCAAACCCAATTACTGTCTAGGATTGCCATCGGCGATGGACATGGTGAGAACTCCCCATATTTTGATGGGTGGAAGGCTTATGAAAATGATCCCTTTCATCCCATCAAAAATCCTAATGGGGTTATCCAGATGGGTCTTGCAGAAAATCAGCTTACTTCTGACTTGGTTCAACAATGGTTAATGAGTAATCCTGGGGCCTCCATTTGCACTCCGGAAGGAGTGCGTGATTTCAAGGCCATAGCTAATTTTCAGGACTACCATGGTCTGCCGGAGTTCACAAAAGCCGTGGCTAAATTCATGGGAAGAACGAGAGGTAATAGAGTGACGTTCGACCCCGACCGTATTGTTATGAGCGGTGGAGCAACCGGAGCACACGAGGTCACTGTCTTCTGTTTAGCAGATCCCGGCGATGCATTTTTGGTCCCCACACCTTATTATCCAGGTTTCGACAGGGATTTGAGGTGGAGAACGGGCGTTGAACTTGTTCCAGTTATCTGCGAAAGCTCTAACAATTTCAAGTTGACAAGGGAAGCGTTGGAAGAAGCGTACGAGAAAGCGAAAGAGGAGAAGGTGAGAATAAAAGGGTTGCTAATCACAAACCCGTCAAACCCATTAGGAACCACGATGGACCGAGAAACTCTAAGAACAGTGGTGAGTTTCATCAACGAAAAACGCATCCACCTAGTAAGCGACGAAATCTACGCGGGCACAGTTTTCGGGCAGGGTGGCAACAGTTTCACGAGCATCTCCGAAATAATAGAGGAAGAGAAAGACATAGAATGCGACCATGACCTAATCCACGTGGTTTATAGTCTCTCGAAGGACATGGGGTTCCCCGGGTTCAGAGTTGGCATCATATACTCTTACAACGACGCAGTGGTGAATTGCGCGCGCAAAATGTCCAGCTTCGGGTTAGTGTCCACGCAGACGCAATACCTCTTGGCCTCGATGCTTAATGATGATGAGTTTGTGGAAGGGTTCGTGGAAGAGAGTGGAAAACGGCTTGCGAAAAGGTACGGTGTTTTGTGTAGGGGACTTGGGGAAGTTGGCATAAAGTGCTTGGAGAGCCATGCGGGAGTTTTTGTGTGGATGGATTTGCGTCATCTTTTGAAGAGGGCTAGTTTTGAAGCGGAAATGGAGCTCTGGAGAGTGATTATTGAGCAAGTTAAGATAAACATTTCCCCTGGCTCTTCTTTTCACTGTTGCGAGCCAGGGTGGTTCAGGGTGTgctatgccaacatggatgacagagccctgcagctttctctggccagaATGCGAACCTTCGTCACCCAAGGCAAGAAATCTTGTGGCCTTAGAGAGTTGAGGCTCAGCTTCTCTTCCCGAAGGTTGGATGAGTTCTTATCCTCACCTCACTCACCTTTTCCTCAGTCGCCTCTTGTTAAAGCCACTACTTGA 1440 0.4625 MELMSVNQTQLLSRIAIGDGHGENSPYFDGWKAYENDPFHPIKNPNGVIQMGLAENQLTSDLVQQWLMSNPGASICTPEGVRDFKAIANFQDYHGLPEFTKAVAKFMGRTRGNRVTFDPDRIVMSGGATGAHEVTVFCLADPGDAFLVPTPYYPGFDRDLRWRTGVELVPVICESSNNFKLTREALEEAYEKAKEEKVRIKGLLITNPSNPLGTTMDRETLRTVVSFINEKRIHLVSDEIYAGTVFGQGGNSFTSISEIIEEEKDIECDHDLIHVVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLLASMLNDDEFVEGFVEESGKRLAKRYGVLCRGLGEVGIKCLESHAGVFVWMDLRHLLKRASFEAEMELWRVIIEQVKINISPGSSFHCCEPGWFRVCYANMDDRALQLSLARMRTFVTQGKKSCGLRELRLSFSSRRLDEFLSSPHSPFPQSPLVKATT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01816 479 Pfam Aminotransferase class I and II 49 427 IPR004839 GO:0009058|GO:0030170
Cca06g01816 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Cca06g01816 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Cca06g01816 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Cca06g01816 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Cca06g01816 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Cca06g01816 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Cca06g01816 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 272 296 - -
Cca06g01816 479 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 304 327 - -
Cca06g01816 479 Gene3D - 71 327 IPR015421 GO:0003824
Cca06g01816 479 Coils Coil 176 203 - -
Cca06g01816 479 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 1 447 - -
Cca06g01816 479 CDD AAT_like 89 434 - -
Cca06g01816 479 Gene3D Aspartate Aminotransferase, domain 1 37 432 IPR015422 GO:0003824
Cca06g01816 479 SUPERFAMILY PLP-dependent transferases 21 437 IPR015424 -
Cca06g01816 479 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 278 291 IPR004838 GO:0003824|GO:0009058|GO:0030170
Cca06g01816 479 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01816 Cca-Chr6 33577230 33580100 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01816 K20772 - gmx:100793020 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01816 06 33577230 33580100 Cca06g01816 06 33577230 33580100 ECH
Cca06g01816 06 33577230 33580100 Cca09g02465 09 50133571 50136700 PCT