Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02429 ATGGGGAATCGACGCTTCACTCAGGTCGCAACCAGCGACGACGAGGACGAAGCACCGCCGCCGCCGAAGCAGCAACCCTCGGCAAATGCCTCCGAAGAGAACCGTTTgaagcagcagcgcaagaggaagaggatgaagctccaagaggaagaagaagaagaagaggaagaggagaaggagaaggagaaggaggaagacaagaaaaagaagagaaggcacaaagacaagccagaggagagatccaacgaagaagaggaaCCACCGCAGGAGGACGCCAAGCCAATTGGCGAACCGCTTAGGGTTTCCGGGAAAGGAAGAGGCCGGAGAAAGCATTTTGAATCCTTCGAGTATGATGGAAACCAATACACGCTGGAAGACCCTATTCTTCTCACTCCTGAAGACAAAGACCAAAAGCCATATGTGGCGATTATTAAGGACATTACGCAATCCTTAAATGGCAGCATGATGATCACAGGGCAGTGGTTTTATCGTCCTGAAGAAGCTGAAAGAAAAGGCGGTGGCAGCTGGCAATCACGCGATACGAGGGAGCTTTTTTATAGTTTCCACCGTGATGAGGTTCCTGCAGAATCTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCAAATCGTAAACAGCATCCTGGATTTATTGTGCAAAAGGTATATGACACGGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGAGGACAATAAACAGCAAGAAATTGATGAGCTTGTTCAAAAAACTCTTCAACGTTTGGGTGAACTTATTGACATTGAACCTGAAGAACCTGTTGTTGATCAGGAAGATTTGATGAAAAATAAAAGAATCTTAAGGAAAAAGAGCATTTCACCTCTTGATGTTTCAAAGGAGGATGAGACAACTCGTAAGAGTGACCAGCTTCTGAAGCCTGAAACACCAGGGAGTTGTGTAAATAATGCCTCAGAACATTATCGCATATTAGTGGATTTCAATGCACTAACAGGAGACACCCATCGTGACAAATGTTTGGAGAAGTTACTTCAAAGTGTTCAATTTATGTTTAATTCTGAAGAGAGCATAAAGAAGGAAGACAAAGGAAATGACAATTCTGATGCAATCAACAATAGGAGCAATAACAAAAGTTTAGAATTAGGGAATGAATGTAAAGACAAGGTTCAAAAGAGTTCCAAGTCTTTTGTCTGGCCAGATGTTGCTGTTCCCGCCATAGTTGCTCTGGAAAAAGCTTCACATGATACTTTTTCATCAGATTATCAGAAGTATAACCAAAAGCTACGACAATTAGTATTTAATCTCAAGAGCAATGCAATCCTTGCACGCCGGTTATTAAATGGAGAGTTGGAACCTTCTACAATATTGAATATGACACCCAATGAGTTGAAGGATCAATAG 1419 0.377 MGNRRFTQVATSDDEDEAPPPPKQQPSANASEENRLKQQRKRKRMKLQEEEEEEEEEEKEKEKEEDKKKKRRHKDKPEERSNEEEEPPQEDAKPIGEPLRVSGKGRGRRKHFESFEYDGNQYTLEDPILLTPEDKDQKPYVAIIKDITQSLNGSMMITGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDEVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGELIDIEPEEPVVDQEDLMKNKRILRKKSISPLDVSKEDETTRKSDQLLKPETPGSCVNNASEHYRILVDFNALTGDTHRDKCLEKLLQSVQFMFNSEESIKKEDKGNDNSDAINNRSNNKSLELGNECKDKVQKSSKSFVWPDVAVPAIVALEKASHDTFSSDYQKYNQKLRQLVFNLKSNAILARRLLNGELEPSTILNMTPNELKDQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02429 472 MobiDBLite consensus disorder prediction 34 49 - -
Cca09g02429 472 CDD BAH_plant_3 102 248 - -
Cca09g02429 472 Coils Coil 29 76 - -
Cca09g02429 472 MobiDBLite consensus disorder prediction 363 385 - -
Cca09g02429 472 Pfam BAH domain 121 237 IPR001025 GO:0003682
Cca09g02429 472 MobiDBLite consensus disorder prediction 61 93 - -
Cca09g02429 472 MobiDBLite consensus disorder prediction 1 107 - -
Cca09g02429 472 Gene3D - 321 471 IPR036575 GO:0006351
Cca09g02429 472 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 471 - -
Cca09g02429 472 SMART BAH_4 120 239 IPR001025 GO:0003682
Cca09g02429 472 ProSiteProfiles TFIIS central domain profile. 341 472 IPR003618 GO:0006351
Cca09g02429 472 Pfam Transcription factor S-II (TFIIS), central domain 337 471 IPR003618 GO:0006351
Cca09g02429 472 ProSiteProfiles BAH domain profile. 120 239 IPR001025 GO:0003682
Cca09g02429 472 SUPERFAMILY Elongation factor TFIIS domain 2 336 471 IPR036575 GO:0006351
Cca09g02429 472 SMART mid_6 374 472 IPR003618 GO:0006351
Cca09g02429 472 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 471 - -
Cca09g02429 472 Gene3D - 22 228 IPR043151 -
Cca09g02429 472 MobiDBLite consensus disorder prediction 296 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02429 Cca-Chr9 49660835 49667869 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02429 - - gmx:100796051 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01799 06 33368501 33377977 Cca09g02429 09 49660835 49667869 PCT