LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g01799	ATGGGGAATCGACGTTTCAGTCGGGTTGCGACGAGCGACGATGAAGACGAATCAGTGGAAGCGCGTCCACAACGCACGCGGAAGCGGATGAGGCTTCTGGAGGAAGATAACGATAACGATGACGAGATTAAGGAAGAAGGGCCTCAGCCTTTGGAGGACGCTAAGCCCATTGGCGAGCCCGTTAGGTTTTCGGGAAAAGGAAGAGGCAGGAAGAAGCACTATGAATCCTTTGAATTCGACGGCATCCAATATAGTCTCGAGGACCCTGTTCTTCTCGTCCCCGAGGAAAAAGGCCAAAAACCATATGTCGCCATTATTAAGGACATTACGCAGGGCAACAATGGTAACGTGATAGTGACGGGGCAGTGGTTTTATCGCCCTGAAGAAGCTGAGAAAAAAAGTGGTGGAAACTGGAAGTCGTGTGATACGAGGGAGCTGTTTTATAGCTTCCACCGTGACAATGTTCCTGCGGAGGCTGTTATGCATAAGTGTGCAGTACATTTTATTCCCTTGCATAAACAACTTCCGAAACGTAAGGATCATCCCGGGTTCATTGTACAGAAAGTGTATGACACTGTTGAAAGAAAACTCTGGAGGCTGAGTGATAAGGACTATGAGGATATTAAACAGAGTGAGATTGATGAGCTTGTTCAGAAGACTCTGAGGCGGATTGGTGAACTACTTGACATTGAGCCTGAGGAGGCCCCTGCTGATGATGAGGACCAACTGAAAGTTGGAAAAACCTTAAGGAGAAAGAGTGATTCATCTCTTGATGTTTCAAGGGAGGAGGAAGAAACTCTTGAAAGTGGACTGCATTCTAAGTCTGAAACACCAGCGAGTTGTGTACCTAATGCCTCAGAGTATTATCGCATATTGGTAGAATTCAATGCTCTAACTGGAGATAGCCATCGTGACAAATGGTTGGAGAGGTTGCTTCAACGCATGCAGTACATGTGTGATTCTAATGATAGAAAAGAAAAGGACAATGGATTAGGAAATGTTAATTCTTCTGATGAAATTAACGTTGGAAGCAAGAGTAGAAGTTCAGAATCAGCAAATGACTGTCAAGACAAGGGTCAAAAGAGTTCCAACTCTTTTATTTGGCCAGATGCTGTTGTTTCAGCCGTAGTTGCTCTTGAAAAAGCTTCATACGGTGCTCTCTCATCAGATTCTACGAAGTACAACCAAAAGTTGCGGCAACTAGCTTTTAATCTCCAGAAAAATGCAGTGTTAGCACGCCATCTATTAAATGGAGAGTTGGAACCTTCAAAAATATTAAATATGACACCCAATGAATTAAAGGAGGGTTTGGTTGCTGAGGAAAGAACCAAGGAGCGTGATGAGACTCAGCACTTGCAAATGACAGATGCCCGCTGCTCAAAATGCATGAATTGTAAGGTGGGTTTGAAAGATATTATCCAAGCTGGAAATAATGAACGTTATCAGCTTGAATGTGTTTCTTGTGGCCATACCTGGTATGCCTCCCGAGATGAGGTGTCTATGCCGACCTTAGATGCGTCGACGTCAAAGGGAAACACAGGCCCAACGCCATAG	1554	0.4466	MGNRRFSRVATSDDEDESVEARPQRTRKRMRLLEEDNDNDDEIKEEGPQPLEDAKPIGEPVRFSGKGRGRKKHYESFEFDGIQYSLEDPVLLVPEEKGQKPYVAIIKDITQGNNGNVIVTGQWFYRPEEAEKKSGGNWKSCDTRELFYSFHRDNVPAEAVMHKCAVHFIPLHKQLPKRKDHPGFIVQKVYDTVERKLWRLSDKDYEDIKQSEIDELVQKTLRRIGELLDIEPEEAPADDEDQLKVGKTLRRKSDSSLDVSREEEETLESGLHSKSETPASCVPNASEYYRILVEFNALTGDSHRDKWLERLLQRMQYMCDSNDRKEKDNGLGNVNSSDEINVGSKSRSSESANDCQDKGQKSSNSFIWPDAVVSAVVALEKASYGALSSDSTKYNQKLRQLAFNLQKNAVLARHLLNGELEPSKILNMTPNELKEGLVAEERTKERDETQHLQMTDARCSKCMNCKVGLKDIIQAGNNERYQLECVSCGHTWYASRDEVSMPTLDASTSKGNTGPTP	517

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca06g01799	517	ProSiteProfiles	BAH domain profile.	82	201	IPR001025	GO:0003682
	Cca06g01799	517	MobiDBLite	consensus disorder prediction	239	271	-	-
	Cca06g01799	517	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	516	-	-
	Cca06g01799	517	SMART	BAH_4	82	201	IPR001025	GO:0003682
	Cca06g01799	517	Gene3D	-	65	293	IPR043151	-
	Cca06g01799	517	Pfam	Transcription factor S-II (TFIIS), central domain	299	448	IPR003618	GO:0006351
	Cca06g01799	517	Pfam	BAH domain	83	197	IPR001025	GO:0003682
	Cca06g01799	517	MobiDBLite	consensus disorder prediction	8	37	-	-
	Cca06g01799	517	MobiDBLite	consensus disorder prediction	333	363	-	-
	Cca06g01799	517	ProSiteProfiles	TFIIS central domain profile.	303	461	IPR003618	GO:0006351
	Cca06g01799	517	CDD	BAH_plant_3	64	210	-	-
	Cca06g01799	517	SUPERFAMILY	Elongation factor TFIIS domain 2	298	434	IPR036575	GO:0006351
	Cca06g01799	517	MobiDBLite	consensus disorder prediction	1	68	-	-
	Cca06g01799	517	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	516	-	-
	Cca06g01799	517	SMART	mid_6	301	443	IPR003618	GO:0006351
	Cca06g01799	517	Gene3D	-	336	435	IPR036575	GO:0006351
	Cca06g01799	517	MobiDBLite	consensus disorder prediction	323	363	-	-
	Cca06g01799	517	MobiDBLite	consensus disorder prediction	233	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca06g01799	Cca-Chr6	33368501	33377977	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g01799	-		-	gmx:100776280	836.639

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca06g01799	06	33368501	33377977	Cca06g01799	06	33368501	33377977	ECH
	Cca06g01799	06	33368501	33377977	Cca09g02429	09	49660835	49667869	PCT