Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02427 ATGGCCGTCGTTTCGCGCTGTGCCACGTGCTCGCGCCACACCTTCATACCACACGAGTTCGATAGAAGAACCACCGTTGCCGCCGCCAGCAGCTTCTGCTACTCTCCCAAGAAAGCTCCGCAGAGGATTGTGGCCGGGAGTACACGTGGCAGTAGAGTGATTGTTGCTGCGAGTCCTCCCACCGAAGACGCACTAGTTGCTACTGAACCACTCACCAAGCAGGATCTCGTCGATTATCTCGCCTCCGGTTGTAAGCCCAGGGACAAATGGAGAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGTTTGGAAGCTTGCGTCCTATGAAGTATGAGCAAATAGCAGAATTGCTGAATAGTATTTCTGAGAGATTTGACTGGGATAAAATAATGGAAGGTGATAAAATTATTGGACTTAAACAAGGGAAGCAGAGCATATCATTGGAGCCTGGTGGTCAGTTTGAACTTAGTGGAGCCCCTCTTGAAACCTTGCATCAGACTTGTGCTGAAGTTAATTCGCACCTTTATCAGGTTAAAGCTGTTGCCGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGGGAAGATATGAAATTATGAGGAATTACATGCCCAAAGTTGGCTCTCTTGGGCTTGACATGATGTTTAGGACATGCACTGTACAGGTCAATCTAGACTTTAGTTCTGAAGTTGACATGATCAGGAAATTTCGTGCTGGTCTTGCTTTGCAACCTATAGCAACTGCTCTTTTTGCTAATTCACCCTTTAAAGAGGGGAAGCCAAATGGTTTTGTCAGTATGAGAAGCCATATTTGGACTGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTTTTTGATGACTCTTTTGGGTTTGAGCAGTATGTTGACTATGCTCTAGATGTTCCTATGTATTTTGTCTATCGGAAACACAGATATATTGACTGTACTGGAAAGACCTTCAGGGATTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTTCCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGGTCAGGCTGAAAAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCATGGAGAAGGTTATGTGCTTTACCAGCACTTTGGGTAGGGTTATTGTATGATGATGTTTCTCTACAAAGTATTTTGGATTTGACAGCTGATTGGACAACCGAAGAAAGACAAATGTTAAGGAATAAGGTTCCTATAACTGGTCTTAAGACACCATTTCGAGATGGTTTGCTGAAGCATGTTGCTGAAGATGTTCTAAAGTTGGCAAAGGATGGCTTGGAGAGAAGAGGCTTCAAGGAATCAGGATTTTTGAATGAGGTTGCCGAGGTGGTTAGAACAGGTGTTACTCCAGCTGAGAGGCTTTTGGAATTGTATCATGGAAAGTGGGAGCAATCCGTAGATCATGTGTTTGAAGAATTGCTTTATTAA 1515 0.4376 MAVVSRCATCSRHTFIPHEFDRRTTVAAASSFCYSPKKAPQRIVAGSTRGSRVIVAASPPTEDALVATEPLTKQDLVDYLASGCKPRDKWRIGTEHEKFGFEFGSLRPMKYEQIAELLNSISERFDWDKIMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGIKDIPIMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEVDMIRKFRAGLALQPIATALFANSPFKEGKPNGFVSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKHRYIDCTGKTFRDFLAGRLPCIPGEFPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPALWVGLLYDDVSLQSILDLTADWTTEERQMLRNKVPITGLKTPFRDGLLKHVAEDVLKLAKDGLERRGFKESGFLNEVAEVVRTGVTPAERLLELYHGKWEQSVDHVFEELLY 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02427 504 PIRSF GCL 57 504 IPR035434 GO:0004357|GO:0006750
Cca09g02427 504 TIGRFAM glu_cys_lig_pln: glutamate--cysteine ligase 70 504 IPR011556 GO:0004357|GO:0006750
Cca09g02427 504 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 44 504 IPR035434 GO:0004357|GO:0006750
Cca09g02427 504 Pfam Glutamate-cysteine ligase family 2(GCS2) 115 413 IPR006336 GO:0004357|GO:0042398
Cca09g02427 504 Gene3D - 56 504 - -
Cca09g02427 504 SUPERFAMILY Glutamine synthetase/guanido kinase 82 502 IPR014746 GO:0003824
Cca09g02427 504 PANTHER GLUTAMATE--CYSTEINE LIGASE 44 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02427 Cca-Chr9 49624318 49636511 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02427 K01919 - gmx:547545 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01798 06 33361808 33368146 Cca09g02427 09 49624318 49636511 PCT