Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01798 ATGGGAGTCCTAAATGGGTGGGGATGGATGGTTTTGgggtcagggtcagggtcagggtcaggCAATGATGAGTTAGTGTACAAAGATAGAGGCAGGAGACGAGGGCAAAGAGTAATCGTTGGTACGGGACCAGCTGTTGATCATCTTCCTCCACTCGCCACAGAGGCTCCCTTGACAAAAGATGATCTTATTAACTTCTTCCTATCTGGTTGCAAGCCCAAACAAGACTGGAGAATAGGTACAGAGCACGAGAAGTTTGGTTTTGAGTTTAAAACTTTACACCCAATTAAATACAAACAAATATCAGCTTTACTCAATTCCATTGCTGTGAGATTTGATTGGGATAAGATAATGGAAGGTGACAACATCATAGGACTCAAACAAGGCAAGCAAAGCATATCATTAGAACCTGGTGGTCAATTAGAGCTTAGTGGTGCGCCTGTGAAAACATTGTATCAAACGTGTGGTGAGATTGATTCACATCTCTACCAAGCTAAAACTGTTGCAGAGGAAATGGGAATTGGATTTGTGGGATTAGGTTTTCAACCAAAATGGAGACTAGGAGACATACCCAGAGTGCCTAAGGGACGGTATAATGTTATGCAAAAGTACTTGCATAAATTTAACTCATCTGGAATTGAATCATTTTTCATGACATGCTCGGTTCAGGTCAACTTGGACTTCAGTTCTGAAGCAGACATGATCAAGAAAATGCGTGCCAGTATTGCTTTGCAGCCTTTAGCAGCAGCCTTATTTGCTAATTCACCTTTTAAGGAAGGGGTTCCAAATGGTTACCTCAGCATAAGAAGCCTTAAGGTGGGTCAGCTTGACAAACGTCGCACAGGCATGCTCCCTTTTGTTTTTTATGACACTTTTGGGTTTGAGCAATATGTTGATTATGTTCTTGATGTGCCAATGGTGTTTGTTTATCGAAACAACAAGTACATAGACTGTGGTGGCATGTCATTCCGGGACTTCATGGCAGGTAAACTGCCTAACATTCCAGGTCAGATGCCAACACTCGCTGATTGGGAAAATCATCTAACAACCATATTTCCTGAGGTCAGGTTAAAGAGATACATGGAAATAAGGGGTGCTGATGGTGGCCCTTTGGACATGTTATGTGCTCTGCCAGCTTTTTGGGCTTATTACATACAAAATTTAAGGAATAAGGTTCCCATAACCGGTTTAAGAACTCCATTTCAAGGTAGATTGTTGCTGCATATCGCAGAAGACGTGTTAAAGTGGGCAAAGGATGGCTTGGATAGAAGATGTTTAAATGAATCTATTTTCTTGAATCCATTGAAAGAAATAGCTACAACAGGTTTGACCCAAGCAGACAAGCTATTGGAGATGTATAATAACAAGTGGGGAAACAACGTAGATGCTGTGTTTAGAGAGCGCTGCTATTAA 1413 0.4048 MGVLNGWGWMVLGSGSGSGSGNDELVYKDRGRRRGQRVIVGTGPAVDHLPPLATEAPLTKDDLINFFLSGCKPKQDWRIGTEHEKFGFEFKTLHPIKYKQISALLNSIAVRFDWDKIMEGDNIIGLKQGKQSISLEPGGQLELSGAPVKTLYQTCGEIDSHLYQAKTVAEEMGIGFVGLGFQPKWRLGDIPRVPKGRYNVMQKYLHKFNSSGIESFFMTCSVQVNLDFSSEADMIKKMRASIALQPLAAALFANSPFKEGVPNGYLSIRSLKVGQLDKRRTGMLPFVFYDTFGFEQYVDYVLDVPMVFVYRNNKYIDCGGMSFRDFMAGKLPNIPGQMPTLADWENHLTTIFPEVRLKRYMEIRGADGGPLDMLCALPAFWAYYIQNLRNKVPITGLRTPFQGRLLLHIAEDVLKWAKDGLDRRCLNESIFLNPLKEIATTGLTQADKLLEMYNNKWGNNVDAVFRERCY 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01798 470 PIRSF GCL 46 386 IPR035434 GO:0004357|GO:0006750
Cca06g01798 470 PIRSF GCL 383 470 IPR035434 GO:0004357|GO:0006750
Cca06g01798 470 SUPERFAMILY Glutamine synthetase/guanido kinase 69 457 IPR014746 GO:0003824
Cca06g01798 470 TIGRFAM glu_cys_lig_pln: glutamate--cysteine ligase 57 382 IPR011556 GO:0004357|GO:0006750
Cca06g01798 470 PANTHER GAMMA GLUTAMYL CYSTEINE SYNTHETASE 68 470 - -
Cca06g01798 470 Gene3D - 48 470 - -
Cca06g01798 470 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 68 470 IPR035434 GO:0004357|GO:0006750
Cca06g01798 470 Pfam Glutamate-cysteine ligase family 2(GCS2) 111 382 IPR006336 GO:0004357|GO:0042398
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01798 Cca-Chr6 33361808 33368146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01798 K01919 - gmx:100775188 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01798 06 33361808 33368146 Cca06g01798 06 33361808 33368146 ECH
Cca06g01798 06 33361808 33368146 Cca09g02427 09 49624318 49636511 PCT