Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02406 ATGGCGTTGCAGGAGAGGCTAGAGAAGTTCAAGAAGCAGCAAGAGAAGTGCCAGACCACGCTGTCGAGCATTGCAGCAAGCAAGGCCGCTGCCCAAAAATCTGCCTCCGCCTCGGCCAACGGAAGAAATGCGGTTCCTCCGGTTAAGTTTTCCAGCGACACCGAGAGGCTTCAGCATATTAACAGCATACGCAAATCCCCTGTGGGTGCTCAGATGAAGCGTGTTATTGACCTCCTTCTAGAGACACGGCAAGCTTTGACACCAGAGCAGATAAATGAGGCGTGCTATGTTGACATGAAGGCTAACAAAGATGTCTTTGAGAATTTGAGGAAAAACCCGAAAGTAAACTATGATGGGCAACGATTCTCTTACAAGTCAAAGTATGGTCTTAAGGACAAAACTGAGCTTCTACATCTGATACGAAAGTATCCAGAGGGTCTTGCTGTTATTGACCTAAAGGATGCGTATCCGACTGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCGGGGCAGATTTGGCTGCTGTCCAACTTTGATTCTCAGGAAGACATTGCCTACCCTAATGATCCCAAAGTGCATATTAAGGTGGATGATGATCTGAAACAGCTTTTCCGGAGTATTGAATTGCCTCGTGATATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCTGCCACTAACACTGCCAAGAGGAGGAGTGCAGCACAAATTCAAGGCATTTCTTCCAAGCCAAAGCCTAAGAAGAAGAAGAGTGAAATCAGCAAGAGAACGAAGCTGACCAATGCCCATCTTCCAGAGCTTTTTCAGAATTTAAACAGTTCCTGA 834 0.4592 MALQERLEKFKKQQEKCQTTLSSIAASKAAAQKSASASANGRNAVPPVKFSSDTERLQHINSIRKSPVGAQMKRVIDLLLETRQALTPEQINEACYVDMKANKDVFENLRKNPKVNYDGQRFSYKSKYGLKDKTELLHLIRKYPEGLAVIDLKDAYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPKVHIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRSAAQIQGISSKPKPKKKKSEISKRTKLTNAHLPELFQNLNSS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02406 277 PIRSF TFIIE-beta 1 276 IPR016656 GO:0005673|GO:0006367
Cca09g02406 277 MobiDBLite consensus disorder prediction 223 277 - -
Cca09g02406 277 Pfam TFA2 Winged helix domain 2 131 188 IPR040501 -
Cca09g02406 277 MobiDBLite consensus disorder prediction 224 243 - -
Cca09g02406 277 PANTHER BNAA02G21830D PROTEIN 1 276 - -
Cca09g02406 277 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 56 131 IPR003166 GO:0006367
Cca09g02406 277 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 276 IPR016656 GO:0005673|GO:0006367
Cca09g02406 277 Pfam TFIIE beta subunit core domain 70 128 IPR003166 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02406 Cca-Chr9 49438405 49441669 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02406 K03137 - gmx:100793998 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01784 06 33154483 33157930 Cca09g02406 09 49438405 49441669 PCT