Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02404 ATGGAAAGTCCCACCGTTGAAAAGTCTGAAGAAACCAATAGACAAATTGACAGTAGTAACACAAAATCCAATTCTAAACAACAGAGTATAGATAAAGCTAATGAACGTCCTGAATGGTTACCTGATGGCTGGAACATGGAAGTCAGAACCCGTAAAAGTGGTGTACATATGGGATCTGGATATAAGTGTTACATTGATCCATTGAAAGGATACAAATTCTTCTCCAAACCGGAGGTGCTACGATATCTCGAAACTGTAAAGGACAATAGTTGCACTTCCAAAAAGGGGAAGAAAAGCAGTAACATACATTCTCCAAGTGACAATGATTGCACTTCCAAGAAGGAGAAGAAAAGCAGTAACATACATTCTCCAGAAGACAATGGTTGCTCTTCCAAGAAGGAGAAAAAATCCAGTAACATGCATTCTCCAAACAACAACAGTTGTGCTTCCAAGAAGGAGAAGAAATGCAGTAACATGGATTCTCCATATGACAACAGTTGCACTTCCAAGGAGAAGAAATGCAGTAATGTGGATTCTCCAACCGATGTTGTGGTTGAGAAGTCTATTGCGGAGGATTTACCACCTGGATGGGTAAAAGAATTAAAGATTAGGAAGAATGGGAATGGCATTCGGAAAGATCCGTTTTATATAGATCCAGTGAGTGGATACGTATTCCGTTCTAAGAAGGATGTACTGCGCTATCTTGAATCTGGTGATATTCATTCATGTGCGTATAAGCCAAGTAGAAGACAAATCCAAGATGAAGACAACTTAACTCCTCCAACCGATGCCAGGAAACAGAAACTGAAGCAATCTCCTCCCAAACAACAGATTTCTGCAGCCACAGAAATACATGATAAAAGCTGCTTAGAATCGCCAGATGCTGACAGCTCAAGGAAAGGGCAAACTGCAAATGTTCCATCTGGAATGATGGTTGCTTCAGTTCCCATGGCTGAATCCATTGTAAAGATGCATTCACTAGAGGATGGATCTGCGTACTCTTCTGAAATGAAAAAAACATCTGACCCAGATGACGTGCAAGAGAAGGAGCATGTTGTGAATATGATAGAGAATGATATTCAAAAGAATTGCAGTAACCATAGCATATCCAGAAATAGGAAGGAGTTCAATGTGGGACACCGGTCGTCACCAAGACTTGCTGGAAGTAAACCTGTCCAGTTGGCCAACAATGTGATCAGTGAACAGACTCTTCAGGTTCGAAAAAGAAACTTGAGGAAAAGTAGAAATACTCTAGATGTTATCTCTGAAGAGCAAACAGTTTCTAAAGAACAACCACATCAGCAAGAAACAGATAAAATAGAAGACAATAAGCCAGAAATTCGAATTAGCTCAAACAAATCAAGTAATAAGAAAGAGCACCACCTTCCTCGTCGGGCTTCAAAACGATTAGCTGGAATTGAGCATCAGTCAATGAACTCCATATCCTGTGAAGAAGCTCCCAAATATAGAAGTAAAAGGTCTAAGGATGAGGTCAAAGGGGAATTGCAGCAAAGTGAGGGTGGGAACTCAGCAAATAAAAGAAAAAAATCAGAACCTCTGCTGGAGAAACGTGAAAATGAAGAAGTGGATGATGAGAAATCAGAACCTCCGCTGTCCTTTGCATTTCACTACTCTTGGTCTGACCCCAGCTTGGAATCTGCAATCAATACCCTCACTGGTGTGTTACCACCAGTTGATAGTAGACCTACTACGGTCTCTGAAACCGATAATCAAAAAACTTTGGTTGGAAATGTTATGGGAAGTGCCACAACAGTCCCTGAAACTGATAATCAAAAAACTTTGGTTGGCAATGTTATGGGAAGAAGTGTCACTACAGTCCCTGAAACTGATATTCAAAAAAATTTGGTAGACAATGTTATGGAAAGAAGCAACGCCATGGTCCCTGAAATTGATATTAAAAAAACTTTGGTTGACGATGTTATAGGAAGAAGCACCGCTACACTCCCTGAAACTGATATTCAAAAAACTTTGGTTGACAATGTTAAAGGAAGAAGTACTGCAACAGTCCCTGAAACTGATATTCAAAAAAATTTGGTTGACAATGTTACAGGAAGAAGCACTGCTACAGTCCCTGAAACTGATGTTCAAAAAACATCAATTGATAATGTTACAGAAAAAAACAGGGACAGTGAAAACAATTTGCTTGATACTGTTACAGGAAGCAGAGACAGAAACTCCCAGGTACGATCAAATAAACCCAAGAGAAAGAAAGAGGTCAAAGTACCTATGCGGTTATCAAAGCGTCTTGCTGGCCTTGAACCCGAGGTGCTGCCGGCTGAAAGAGCTCTTGAATATTCCTCTAGAAAATCATGCAAAGAAGAACCAACCGTGGCTGCTACTTCAACTAATGGAGTGTCAGACCATCTTGATGCTGGGGAAGAAACCAAGCTTGCTCTTCAGGCTTCTGACAGTTTGAAAACCGAAGTACTGGGAGAATCATCAAACAAGAGTGAGAAGTCACGTGATACCCTAACTGGTCACAAGAAACAATTGCAGAAAGTTGAAGCAGAAAATATTGGTGATGAGAGATCAGAGCAACGGCTCCCGTTACCATTTGGGGGCTCTTGGTCAGATCCATGCCTCGAATTTGCAATCAAGACTCTCACTGGTGCTTTGCCGGTTGATTCTGGTGCCGACAATATGCCACTTTTCCCTCCCGGCTTTGATAATCCACCATATAAGAAATCACATGGTAGTGCGGTTAAAAGCACTAATCAAGAAGCTTGTGATAACTCAAAACAATCCCCAAACAATAAAGAGCTTAATATGGTCAGCCAACCTGAGTTGAGGATCGGCCCCACCTCTTATGAAATTGCTCCTAAGTTTACAACTAGAGAGTCTTGTGTTGATCAAGGCAATATAATAAGGAATTTGGATGAAGAACCTTGTCACACCGGAAACATAACACAACCTGTGTATCATTCTAGGAATATAAACACACTATCACATGAAGAGCCATTAAAGCAAAATGGGCAGGTTGTAGAGGGTGGATTGGTTTCAACAGAGCAACTATTTCAACCTGGAACTGTAAACCATGACAATTCTGAATTACAGTATTGTGCTCCATTTATGAATTCTTGGTCAGACCCATGCTTAGAATTTGCATTTAAGACTCTTACAGGCGTGATACCGGTTGAGGAAAATTTAACACTTCAAGGATGTTTCCAGGAGCCTGCTAACTATAATGAACGAAGGGACAGTGGTTCAATGTTGCCAGATTTCGGATCTTCGAGCTTTTCTCATAGTGATTTCTCATTTCTCCATGATACAGGGGTTAAGTCCATGCCGGGGCAGCAGTCATCAATGAGCTCTTCATTCCTACCGGTGGAAAAAACGAGCCTGCAAGGTTTTGCAGGAGTTGATCCTCAAACACACTTTTCTCAGTGCAACAATAATTTTCAAAGAAGATCTAGGTAA 3438 0.4087 MESPTVEKSEETNRQIDSSNTKSNSKQQSIDKANERPEWLPDGWNMEVRTRKSGVHMGSGYKCYIDPLKGYKFFSKPEVLRYLETVKDNSCTSKKGKKSSNIHSPSDNDCTSKKEKKSSNIHSPEDNGCSSKKEKKSSNMHSPNNNSCASKKEKKCSNMDSPYDNSCTSKEKKCSNVDSPTDVVVEKSIAEDLPPGWVKELKIRKNGNGIRKDPFYIDPVSGYVFRSKKDVLRYLESGDIHSCAYKPSRRQIQDEDNLTPPTDARKQKLKQSPPKQQISAATEIHDKSCLESPDADSSRKGQTANVPSGMMVASVPMAESIVKMHSLEDGSAYSSEMKKTSDPDDVQEKEHVVNMIENDIQKNCSNHSISRNRKEFNVGHRSSPRLAGSKPVQLANNVISEQTLQVRKRNLRKSRNTLDVISEEQTVSKEQPHQQETDKIEDNKPEIRISSNKSSNKKEHHLPRRASKRLAGIEHQSMNSISCEEAPKYRSKRSKDEVKGELQQSEGGNSANKRKKSEPLLEKRENEEVDDEKSEPPLSFAFHYSWSDPSLESAINTLTGVLPPVDSRPTTVSETDNQKTLVGNVMGSATTVPETDNQKTLVGNVMGRSVTTVPETDIQKNLVDNVMERSNAMVPEIDIKKTLVDDVIGRSTATLPETDIQKTLVDNVKGRSTATVPETDIQKNLVDNVTGRSTATVPETDVQKTSIDNVTEKNRDSENNLLDTVTGSRDRNSQVRSNKPKRKKEVKVPMRLSKRLAGLEPEVLPAERALEYSSRKSCKEEPTVAATSTNGVSDHLDAGEETKLALQASDSLKTEVLGESSNKSEKSRDTLTGHKKQLQKVEAENIGDERSEQRLPLPFGGSWSDPCLEFAIKTLTGALPVDSGADNMPLFPPGFDNPPYKKSHGSAVKSTNQEACDNSKQSPNNKELNMVSQPELRIGPTSYEIAPKFTTRESCVDQGNIIRNLDEEPCHTGNITQPVYHSRNINTLSHEEPLKQNGQVVEGGLVSTEQLFQPGTVNHDNSELQYCAPFMNSWSDPCLEFAFKTLTGVIPVEENLTLQGCFQEPANYNERRDSGSMLPDFGSSSFSHSDFSFLHDTGVKSMPGQQSSMSSSFLPVEKTSLQGFAGVDPQTHFSQCNNNFQRRSR 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02404 1145 MobiDBLite consensus disorder prediction 108 139 - -
Cca09g02404 1145 MobiDBLite consensus disorder prediction 511 535 - -
Cca09g02404 1145 MobiDBLite consensus disorder prediction 486 502 - -
Cca09g02404 1145 PANTHER OS04G0193200 PROTEIN 657 1135 IPR038945 -
Cca09g02404 1145 Pfam Methyl-CpG binding domain 33 91 IPR001739 GO:0003677
Cca09g02404 1145 Pfam Methyl-CpG binding domain 192 239 IPR001739 GO:0003677
Cca09g02404 1145 MobiDBLite consensus disorder prediction 160 174 - -
Cca09g02404 1145 MobiDBLite consensus disorder prediction 773 795 - -
Cca09g02404 1145 MobiDBLite consensus disorder prediction 429 457 - -
Cca09g02404 1145 Coils Coil 1145 1145 - -
Cca09g02404 1145 CDD MBD 193 242 - -
Cca09g02404 1145 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 30 107 IPR001739 GO:0003677
Cca09g02404 1145 PANTHER OS04G0193200 PROTEIN 657 1135 - -
Cca09g02404 1145 PANTHER OS04G0193200 PROTEIN 2 566 - -
Cca09g02404 1145 PANTHER OS04G0193200 PROTEIN 2 566 IPR038945 -
Cca09g02404 1145 SMART TAM_2 186 254 IPR001739 GO:0003677
Cca09g02404 1145 MobiDBLite consensus disorder prediction 415 535 - -
Cca09g02404 1145 MobiDBLite consensus disorder prediction 715 748 - -
Cca09g02404 1145 MobiDBLite consensus disorder prediction 1 15 - -
Cca09g02404 1145 MobiDBLite consensus disorder prediction 86 180 - -
Cca09g02404 1145 SUPERFAMILY DNA-binding domain 191 244 IPR016177 GO:0003677
Cca09g02404 1145 MobiDBLite consensus disorder prediction 1 45 - -
Cca09g02404 1145 MobiDBLite consensus disorder prediction 780 795 - -
Cca09g02404 1145 SUPERFAMILY DNA-binding domain 25 91 IPR016177 GO:0003677
Cca09g02404 1145 Gene3D - 156 287 - -
Cca09g02404 1145 Gene3D - 5 155 - -
Cca09g02404 1145 MobiDBLite consensus disorder prediction 819 851 - -
Cca09g02404 1145 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 183 250 IPR001739 GO:0003677
Cca09g02404 1145 MobiDBLite consensus disorder prediction 814 855 - -
Cca09g02404 1145 MobiDBLite consensus disorder prediction 248 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02404 Cca-Chr9 49420688 49427641 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02404 - - ccaj:109801417 2247.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01783 06 33141498 33151735 Cca09g02404 09 49420688 49427641 PCT