Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02402 ATGACAATCACAAAATACATGCTTGTTGCCCTCGCTCTATGTTTCTTAACCTCTGCCTACGCCGCAAGGTTTGACATCACAAACCGATGCTCCTACCCAGTGTGGGCCGCGGCCGTGCCCGGAGGAGGAAGGAGGCTGAACTCGGGGCAGTCATGGGCCCTTGACGTGGCGGCAGGAACGAAAGGGGCCCGCATCTGGGCCcgaacgggatgcaacttcgacggttcgggccgcgggcattgccagaccggtgactgcgggggcgtcttggagtgtaaagcatacggtacacctcccaacaccctagcggaatacgcgctgaaccagtacaacaacttggacttcttcgacatctccctcgtcgacggtttcaacgttcccatggacttcagccctacctccaacggctgcACACGTGGCATAAAATGCACTGCCGACATTAATCGACAGTGTCCCACTCAGCTTAAGACTCAAGGGGGCTGTAACAACCCATGTACTGTCTTCAAAACCGACAACTATTGTTGCAATTCCGGAGTTGAGAAATTATCATATCCAGCTCAGCTCATAGGTATTTCATGGCAACCATCGTAA 591 0.335 MTITKYMLVALALCFLTSAYAARFDITNRCSYPVWAAAVPGGGRRLNSGQSWALDVAAGTKGARIWARTGCNFDGSGRGHCQTGDCGGVLECKAYGTPPNTLAEYALNQYNNLDFFDISLVDGFNVPMDFSPTSNGCTRGIKCTADINRQCPTQLKTQGGCNNPCTVFKTDNYCCNSGVEKLSYPAQLIGISWQPS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02402 196 PANTHER THAUMATIN-RELATED 9 179 - -
Cca09g02402 196 CDD TLP-P 24 152 - -
Cca09g02402 196 Gene3D Thaumatin 22 193 IPR037176 -
Cca09g02402 196 PANTHER OS03G0233200 PROTEIN 9 179 IPR001938 -
Cca09g02402 196 SUPERFAMILY Osmotin, thaumatin-like protein 22 185 IPR037176 -
Cca09g02402 196 PRINTS Pathogenesis-related protein signature 114 130 IPR001938 -
Cca09g02402 196 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Cca09g02402 196 PRINTS Pathogenesis-related protein signature 42 51 IPR001938 -
Cca09g02402 196 PRINTS Pathogenesis-related protein signature 64 75 IPR001938 -
Cca09g02402 196 PRINTS Pathogenesis-related protein signature 77 106 IPR001938 -
Cca09g02402 196 SMART tha2 24 195 IPR001938 -
Cca09g02402 196 ProSiteProfiles Thaumatin family profile. 21 175 IPR001938 -
Cca09g02402 196 PIRSF PR5 1 185 IPR001938 -
Cca09g02402 196 Pfam Thaumatin family 28 178 IPR001938 -
Cca09g02402 196 ProSitePatterns Thaumatin family signature. 77 92 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02402 Cca-Chr9 49410101 49412078 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02402 7 175 Receptor kinase-like Gene Family AT5G38280 32.632 3.20e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02402 - - gmx:100301882 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01782 06 33136575 33137114 Cca09g02402 09 49410101 49412078 PCT