Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01782 ATGGCCCGCATCTGGGGCCGCACCGGGTGCAACTTCGACGGCAGCGGGCGCGGGCGGTGCGAGACGGGCGACTGCAGCGGCGGAGTGGAGTGCAGCGGGTGGGGCGTCCCTCCGAACACGCTGGCGGAGTTCGCTCTGAACCAGTTCAACAACCTGGACTTCTACGACATTTCCCTGGTGGACGGGTTCAACATTCCGATGGACTTCTACCCAGTGAACGGGGCCTGCCACAAAATCAGTTGCACGGCGGACATTAATGGGCAGTGCCCAGGCCCATTAAGGGCCCCCGGAGGGTGCAACAACCCTTGCACTGTTTTCAAGACGAATGAGTATTGCTGCACCAATGGGCAGGGTAGCtgcacggccactaactactcccgtttcttcaaggataggtgccgtgatgcttatagttaccctcaggatgaccctacaagtaccttcacttgccccgccggttctaactacagggttgtcttctgcccCCTCGGATATCCTCATGTTCCTCTTCTCATGCCTACTACCACCGCCACCCACTAA 540 0.463 MARIWGRTGCNFDGSGRGRCETGDCSGGVECSGWGVPPNTLAEFALNQFNNLDFYDISLVDGFNIPMDFYPVNGACHKISCTADINGQCPGPLRAPGGCNNPCTVFKTNEYCCTNGQGSCTATNYSRFFKDRCRDAYSYPQDDPTSTFTCPAGSNYRVVFCPLGYPHVPLLMPTTTATH 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01782 179 Pfam Thaumatin family 2 162 IPR001938 -
Cca06g01782 179 SMART tha2 1 162 IPR001938 -
Cca06g01782 179 ProSitePatterns Thaumatin family signature. 16 31 IPR017949 -
Cca06g01782 179 Gene3D Thaumatin 1 163 IPR037176 -
Cca06g01782 179 PANTHER OS03G0233200 PROTEIN 2 162 IPR001938 -
Cca06g01782 179 PANTHER PATHOGENESIS-RELATED PROTEIN R MINOR FORM 2 162 - -
Cca06g01782 179 SUPERFAMILY Osmotin, thaumatin-like protein 2 162 IPR037176 -
Cca06g01782 179 ProSiteProfiles Thaumatin family profile. 1 162 IPR001938 -
Cca06g01782 179 PRINTS Pathogenesis-related protein signature 3 14 IPR001938 -
Cca06g01782 179 PRINTS Pathogenesis-related protein signature 16 45 IPR001938 -
Cca06g01782 179 PRINTS Pathogenesis-related protein signature 53 69 IPR001938 -
Cca06g01782 179 PRINTS Pathogenesis-related protein signature 152 161 IPR001938 -
Cca06g01782 179 PIRSF PR5 1 177 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01782 Cca-Chr6 33136575 33137114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01782 3 162 Receptor kinase-like Gene Family AT5G38280 38.983 3.68e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01782 - - gmx:100240704 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01782 06 33136575 33137114 Cca06g01782 06 33136575 33137114 ECH
Cca06g01782 06 33136575 33137114 Cca09g02402 09 49410101 49412078 PCT