Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00316 ATGGAGAAGCCATCGTCGTCGTTCTCCCCAGGAACATCGAGCACGAAGGTGAAAGCTTCGAGCGATGCAAACACGAGCTTGAGTACGCTGAACGAGGACCTTCTTCAGAACATTCTAGCAAGGCTTCCTGCACTGCCCTTCGCTTCCGCAGCCTGCGTCAGCAAAACATGGAACGCTCTCTGCAATCGCATCCTCTCTCGCCCCAAACTCTCTTCCGCGCTTTCCCTCAACCCTTCGCTCCCCGATGCTGTGAACGAGGTTGTTCACAAGGTTCTGTCGGAGCCAATTCGGCCTTATTTTGCTATTGCCAATGTTGGAACTGGATTCAGCTCGTCCAAGACTCTGCGACTTATTAGACAGTCGTTGGGGTCCAATATTCCGGTTATTGTTACCGTGGCGAATGGTATTATGGGAAGGGACGCTGTTACTGATGAGTTTAAAGAGGTCAAATGGGGTGCCCTTTTTAGTGGCTTGGGTGAGGAAGCATACGCGAGATTTATAAATGAAGGCATAGTTTTGACTGTTGGCTACTTGCCTGGATTGAAGGTTGAAGCTGTGCCGTTGCGACGACCGCCAAAGGCATCTCAAGTACCATGGGTTGACAATTTTATAAAGGATATTAAGGAATATTCAGCTTCTGTCTCCAGTCGCCCATTCCCTGTTGGGATTATATTGTTTGGAGAAGCAAGCAGTGACATGAAATTGGTTCTGGAGAAATTGGATTATGCCATGCCTATGGATACAGTCATTGTGGGTGATGAGCGAGGCTCCTTTGACTTTGTACACAAAAGTGGGAATGATTCTGGAATCATTTGTAGTAAAAAAGGAAACATAGAAGCTGTTGCTCTCGTATTTGCTCAGGACAGAGACAGGTCTTTGGGGACTATTAGGTTTCATGTTGCATTGTCAAATGGTGTTTCGGCTGTGGGTCCCAGATACAAGGCAGCCTCAGTTAGACCAAACAACACTGATTGTTCAACATGGCTAACTGCTAGGAGGGAAGGGCAACTGGAGCTTCTTGATGGTCAGAGTATTCTACTTGATATCAACAATTTGCTGGACAATCATATCGAGTCTCCTGATTTGTACATTGGTGTAATTAAACACAGGAAATTCTCCACTGGAGCAGAGAAGCCAATGCCAAGAACATGTATTGCATATCATGGAGTTGTGGGAGGTGATGAAGAGTATCTATATGTTGATGGCATTGGCATAAAAACTGGAGATTTCTTTCAGTTCTACTATTCAGATCCTAATACTGCATTGGCTTCATTAACCAAGGAGTGCCAGTATCTGGAATATTTTGTGGTGGAGAAATGGGTTCCTTCCTTCTCTCTCCTCCTTCCCGCTCGCCGCCGGAATCTTGTTTTCCGGTCATATTCCGGCCAACCGAGACCGTTTCCGTTCTTCCGCTTCGCTTTTCGAATTCAACTAATCTGTTTCAGTTCGGAGCTGTTGCTAGCTTCGATATTGAAGCAGGGGGAAGATATGGCAAGTCAAGCCGGCGCCTCTCGAAGGAGTTTTTCGTCGACGAAGAAAGCCTCTGAATCAGGCGTGCCTCACGCGACTTCTCGAAAATCGATTTCGTCTACGCGACCTATGGCATTAGCGGGAGAGCGGACAGTGAAATCATTGCGACTTTCAAAGGCCCTGACAGTACCTGAAACAACAACTGTCTTTGAGGCTTGCCGCCGGATGGCTGCTCGTAGAGTGGATGCTCTATTACTGACCGATTCTAATGGTTTGCTCTGTGGAATCCTCACAGATAAGGATATAGCAACAAAAGTTATTGCCAAAGAGATTAATCTTGAAGACACACCAGTTTCCAAAGTTATGACTAGGAACCCAGTATTTGTCCTTTCTGAAACTCTTGCTGCGGAAGCCCTTCAAAAGATGGTGCAAGGGAAATTCAGACATTTACCTGTGGTGGAAAATGGAGAAGTTTTGGCTTTACTAGACATAGCAAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGTAGCTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACACTGGGAAACATCAGACTCCAATACATCATTCATTGAGACTCTTCGGGAGCAGATATTCAAGCCATTGTTGTCTACAATCATTCCCGAGAATTCAAAGCCTGTAACAGTTTCACCAACAGACTCAGTTCTGACAACAACAAAGAAGATGGTTGAATTTCGTGCAAGTTGTGCTGTTGTGACAGTTAATAACAAACCTCGTGGCATCTTTACTTCAAAGGATATCTTGATGCGGGTAATTGCACAAAATCTTTCTCCACAGTCAACTCCCATCGAGAAGGTCATGACTCCAAATCCAGAATGCGTAGTAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGAAAATTTTTGCATCTTCCTGTGGTTGACAGAGATGGCAATGTAGTTGCTGTGGTGGATGTGATTCATGTCACTCATGCTGCTGTGGCGACAGTAAGTCAGGTTGTTGGAAACAATGAAGCGGCAACCACCTTGATGCAAAGATTTTGGGATTCAGCCATGGCCTTAACTCCACATGATGATGACGATGATTCTCGAAGTGACAGTTCCTTGAAATTGACTTCCGAGGGAGGAGAAACAGGGAGATCCGTTCCTTATCTTTCGTTAGGCATGCCCAATACATTTTCTTTCAAAATACAAGATAAGAAGGGCAGAATGCACAGATTCACATGTGATACCCGGAGCATGACGGAGATTATAACTTCAATCCTTCAGAGACTTGGTGATGATATTGATCCTAACAACATACCCCAAATTCTGTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGACCTTGCGGCAGCAGTGGATCACGCAAGGACAGCTGGTTTGAAGGGGTTGAAATTGCATTTAGATTACACAGGAGCACGTGGTAATGTGAAAGGTTCTCGTTCAGGATCAAGTCATGCTTATTCGGATGCATGGGCCTCATCATATAGTGCCGCTGCTGCTGGAGCTGCACTTGTTGCCGGCTTAGGCTTATTATCGTACTTGAAGCGAGTTTAA 3084 0.4517 MEKPSSSFSPGTSSTKVKASSDANTSLSTLNEDLLQNILARLPALPFASAACVSKTWNALCNRILSRPKLSSALSLNPSLPDAVNEVVHKVLSEPIRPYFAIANVGTGFSSSKTLRLIRQSLGSNIPVIVTVANGIMGRDAVTDEFKEVKWGALFSGLGEEAYARFINEGIVLTVGYLPGLKVEAVPLRRPPKASQVPWVDNFIKDIKEYSASVSSRPFPVGIILFGEASSDMKLVLEKLDYAMPMDTVIVGDERGSFDFVHKSGNDSGIICSKKGNIEAVALVFAQDRDRSLGTIRFHVALSNGVSAVGPRYKAASVRPNNTDCSTWLTARREGQLELLDGQSILLDINNLLDNHIESPDLYIGVIKHRKFSTGAEKPMPRTCIAYHGVVGGDEEYLYVDGIGIKTGDFFQFYYSDPNTALASLTKECQYLEYFVVEKWVPSFSLLLPARRRNLVFRSYSGQPRPFPFFRFAFRIQLICFSSELLLASILKQGEDMASQAGASRRSFSSTKKASESGVPHATSRKSISSTRPMALAGERTVKSLRLSKALTVPETTTVFEACRRMAARRVDALLLTDSNGLLCGILTDKDIATKVIAKEINLEDTPVSKVMTRNPVFVLSETLAAEALQKMVQGKFRHLPVVENGEVLALLDIAKCLYDAIARMERVAEKGKAIAAAVEGVEKHWETSDSNTSFIETLREQIFKPLLSTIIPENSKPVTVSPTDSVLTTTKKMVEFRASCAVVTVNNKPRGIFTSKDILMRVIAQNLSPQSTPIEKVMTPNPECVVIDTPIVDALHTMHDGKFLHLPVVDRDGNVVAVVDVIHVTHAAVATVSQVVGNNEAATTLMQRFWDSAMALTPHDDDDDSRSDSSLKLTSEGGETGRSVPYLSLGMPNTFSFKIQDKKGRMHRFTCDTRSMTEIITSILQRLGDDIDPNNIPQILYEDEDHDKVVLASDSDLAAAVDHARTAGLKGLKLHLDYTGARGNVKGSRSGSSHAYSDAWASSYSAAAAGAALVAGLGLLSYLKRV 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00316 1027 SUPERFAMILY CBS-domain pair 716 828 IPR046342 -
Cca03g00316 1027 ProSiteProfiles CBS domain profile. 612 670 IPR000644 -
Cca03g00316 1027 SUPERFAMILY CAD & PB1 domains 888 980 - -
Cca03g00316 1027 SUPERFAMILY F-box domain 25 62 IPR036047 GO:0005515
Cca03g00316 1027 CDD CBS_pair_MUG70_1 547 663 - -
Cca03g00316 1027 Gene3D - 896 977 - -
Cca03g00316 1027 Pfam CBS domain 715 761 IPR000644 -
Cca03g00316 1027 Pfam CBS domain 776 825 IPR000644 -
Cca03g00316 1027 Pfam CBS domain 548 595 IPR000644 -
Cca03g00316 1027 Pfam CBS domain 608 651 IPR000644 -
Cca03g00316 1027 ProSiteProfiles CBS domain profile. 779 836 IPR000644 -
Cca03g00316 1027 ProSiteProfiles PB1 domain profile. 893 980 IPR000270 GO:0005515
Cca03g00316 1027 SUPERFAMILY CBS-domain pair 539 655 IPR046342 -
Cca03g00316 1027 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g00316 1027 CDD CBS_pair_MUG70_2 715 814 - -
Cca03g00316 1027 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 517 1015 - -
Cca03g00316 1027 SMART cbs_1 549 597 IPR000644 -
Cca03g00316 1027 SMART cbs_1 717 764 IPR000644 -
Cca03g00316 1027 SMART cbs_1 782 830 IPR000644 -
Cca03g00316 1027 SMART cbs_1 615 659 IPR000644 -
Cca03g00316 1027 SMART fbox_2 30 70 IPR001810 GO:0005515
Cca03g00316 1027 Gene3D - 519 677 IPR046342 -
Cca03g00316 1027 Gene3D - 683 841 IPR046342 -
Cca03g00316 1027 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 517 1015 - -
Cca03g00316 1027 Pfam PB1 domain 895 978 IPR000270 GO:0005515
Cca03g00316 1027 SMART PB1_new 895 980 IPR000270 GO:0005515
Cca03g00316 1027 CDD PB1_MUG70 896 980 - -
Cca03g00316 1027 ProSiteProfiles CBS domain profile. 546 606 IPR000644 -
Cca03g00316 1027 MobiDBLite consensus disorder prediction 502 531 - -
Cca03g00316 1027 MobiDBLite consensus disorder prediction 858 886 - -
Cca03g00316 1027 Pfam F-box domain 28 65 IPR001810 GO:0005515
Cca03g00316 1027 ProSiteProfiles CBS domain profile. 711 769 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00316 Cca-Chr3 4978633 4994115 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00316 - - gmx:100785816 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00316 03 4978633 4994115 Cca09g02398 09 49367183 49373678 PCT