Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02391 ATGGGCGAGGAGGAAAAGAAACCAGAGGAGCCCAAGAAGGAAGAAGAGAACAAAAAGGAAGACAAGAAACCAGAGGAACCAAAACAATCCAAGGAGGAGCCACCACCGCCGCCGCCGGAGATTGTGCTTAAAGTGTTCATGCATTGCGAAGGTTGCGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGCGTGGAAGATGTTCTCACCGACTGCAAGTCTCACAAGGTTGTGGTGAAGGGAGAGAAAGCGGATCCGGTGAAGGTTCTAGAGAGAGTGCAGAGGAAGAGCCACCGCAAGGTGGAGCTTCTCTCTCCGATCCCAAAGCCAGCggcggaggaggagaaagagaagccggaggcggagcagccggaggagaagaagaaggaagagCCTCAGGTGGTGACGGTTGTTCTCAAAGTTCACATGCATTGCGAAGCGTGCGCCCAGGAAATCAAGAGACGCATCGAGAAGATGAAAGGGGTGGAAGCAGCGGAGGCGGATCTGAAGAGCTCGGAGGTGAGCGTGAAGGGGGTGTTTGAGACGGCGAAGCTGGTGGAGAGCGTGTACaagaggacggggaagcatgcggtgatagtgaaggaggaagcagagaagaagaaggaggaagagaagaaggagaaggaaggtgagaagaaagagggagagggtgaaggtgaaggtgaaggtgaaggtgaaggtgaaggtgaaggtgagaagaaggagggagagggtgaagcgaaagccgaagagagcacggtggtggaggtgaagaagAGTGAGTACTACTACAATCCACCACGGTACGGGACGGAGTTCTATGCTTACCCTGCACCCCCGTATCCACCTCAGATCTTCAGTGATGAGAACCCCAATGCTTGCTCTGTCATGTGA 897 0.3802 MGEEEKKPEEPKKEEENKKEDKKPEEPKQSKEEPPPPPPEIVLKVFMHCEGCARKVRRSLKGFPGVEDVLTDCKSHKVVVKGEKADPVKVLERVQRKSHRKVELLSPIPKPAAEEEKEKPEAEQPEEKKKEEPQVVTVVLKVHMHCEACAQEIKRRIEKMKGVEAAEADLKSSEVSVKGVFETAKLVESVYKRTGKHAVIVKEEAEKKKEEEKKEKEGEKKEGEGEGEGEGEGEGEGEGEKKEGEGEAKAEESTVVEVKKSEYYYNPPRYGTEFYAYPAPPYPPQIFSDENPNACSVM 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02391 298 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 298 - -
Cca09g02391 298 Pfam Heavy-metal-associated domain 43 96 IPR006121 GO:0046872
Cca09g02391 298 Pfam Heavy-metal-associated domain 140 197 IPR006121 GO:0046872
Cca09g02391 298 Gene3D - 132 201 - -
Cca09g02391 298 Gene3D - 38 110 - -
Cca09g02391 298 ProSiteProfiles Heavy-metal-associated domain profile. 144 200 IPR006121 GO:0046872
Cca09g02391 298 CDD HMA 47 103 IPR006121 GO:0046872
Cca09g02391 298 CDD HMA 139 198 IPR006121 GO:0046872
Cca09g02391 298 ProSiteProfiles Heavy-metal-associated domain profile. 47 103 IPR006121 GO:0046872
Cca09g02391 298 MobiDBLite consensus disorder prediction 95 133 - -
Cca09g02391 298 MobiDBLite consensus disorder prediction 1 33 - -
Cca09g02391 298 Coils Coil 200 226 - -
Cca09g02391 298 MobiDBLite consensus disorder prediction 200 227 - -
Cca09g02391 298 SUPERFAMILY HMA, heavy metal-associated domain 133 202 IPR036163 GO:0046872
Cca09g02391 298 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 298 IPR044577 GO:0046872
Cca09g02391 298 MobiDBLite consensus disorder prediction 1 41 - -
Cca09g02391 298 SUPERFAMILY HMA, heavy metal-associated domain 42 97 IPR036163 GO:0046872
Cca09g02391 298 MobiDBLite consensus disorder prediction 200 258 - -
Cca09g02391 298 MobiDBLite consensus disorder prediction 235 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02391 Cca-Chr9 49304707 49306288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02391 - - gmx:100808454 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00310 03 4817301 4819569 Cca09g02391 09 49304707 49306288 ECH
Cca09g02391 09 49304707 49306288 Cca09g02391 09 49304707 49306288 ECH
Cca09g02391 09 49304707 49306288 Cca03g00310 03 4817301 4819569 PCT