Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00310 ATGAGGGAGGTGGAAAAGAAATCGGAGGAACCCAAGGCAGAGGAGAAAGTACCAGAGGAAGCACAAAAGAACGATGAAGAAGAAACAAAGCCAGCGGAGAAACCGGCGGAAGAGATAAAAGCAGAAGAGTCCAAACCAGAAGAAGTTGCTCTTCCACCGCCACCACCGACCGAGATCGTACTTAAAGTGTTCATGCATTGCGAAGGTTGCGCTCGCAAAGTTCGTCGCTGCCTCAAAGGATTCCCAGGTGTTGAAAAGGTGGTAACCGATTGCAAATCTCACATGGTGGTTGTCAAGGGAGAGAAAGCTGATCCGCTTAAGGTTTTGGAGAGAATACAGAAGAAGAGTCACAGGAAGGTTGAACTTCTCTCTCCGATCCCCAAGCCTGAAGAAGAGAACAAGGTCCAAGAGGAGGAAAAGCCCAAGCCGGAGCCCAAGCCCGAAGTGAAGAAGGAAGAGTCTCCTATTGTGACGGTTCTCAAAGTTCACATGCATTGCGAAGCTTGCGCTCAGGAAATCAAGAGACGTATACAGAGAATGAACGGAGTGGAATCAGCAGAAACCGATCTGAAAAACTCGCAAGTGAGCGTGAAGGGTGTCTATGATCCAGCGAAGTTGGTGGAGTACGTGTACAAGAGAAGTGGGAAGCACGCTGTGATCATgaagcaagaagagggtgagaagaaagagaaagtggaggaaccgaaaggggaagagaagaaagaggaagagaagaagagtgatgaaagcaaagaaaagaaagagaagaaagaagaaggagaagaaacaaagggtgaaggtgaaggtgaaggtgaaggtgaaggtgaaggtgaaggtgaaggtgaaggtgaaggtgaaggtaaagctaaagcagaggaagtagtagcagcagcagcaacagtaacaacagaaacagcaacacctgaagagaacaacaacGCTGTGGCAGAAGTGAAAATAAATGAATATTTCTATAACCCACAAAGGTATGGCATGGAGGTGTATGCACCCCCTCCTGCTGCACAGTACCCAGCGTATTACCATGCGTACCCCCCTCAGATCTTCAGTGATGAGAACCCGAATGCCTGCACCGTCATGTAA 1101 0.366 MREVEKKSEEPKAEEKVPEEAQKNDEEETKPAEKPAEEIKAEESKPEEVALPPPPPTEIVLKVFMHCEGCARKVRRCLKGFPGVEKVVTDCKSHMVVVKGEKADPLKVLERIQKKSHRKVELLSPIPKPEEENKVQEEEKPKPEPKPEVKKEESPIVTVLKVHMHCEACAQEIKRRIQRMNGVESAETDLKNSQVSVKGVYDPAKLVEYVYKRSGKHAVIMKQEEGEKKEKVEEPKGEEKKEEEKKSDESKEKKEKKEEGEETKGEGEGEGEGEGEGEGEGEGEGEGKAKAEEVVAAAATVTTETATPEENNNAVAEVKINEYFYNPQRYGMEVYAPPPAAQYPAYYHAYPPQIFSDENPNACTVM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00310 366 MobiDBLite consensus disorder prediction 265 281 - -
Cca03g00310 366 MobiDBLite consensus disorder prediction 1 47 - -
Cca03g00310 366 Gene3D - 56 128 - -
Cca03g00310 366 ProSiteProfiles Heavy-metal-associated domain profile. 65 121 IPR006121 GO:0046872
Cca03g00310 366 Coils Coil 239 260 - -
Cca03g00310 366 Pfam Heavy-metal-associated domain 160 212 IPR006121 GO:0046872
Cca03g00310 366 Pfam Heavy-metal-associated domain 61 115 IPR006121 GO:0046872
Cca03g00310 366 CDD HMA 159 218 IPR006121 GO:0046872
Cca03g00310 366 SUPERFAMILY HMA, heavy metal-associated domain 57 115 IPR036163 GO:0046872
Cca03g00310 366 Gene3D - 153 221 - -
Cca03g00310 366 MobiDBLite consensus disorder prediction 222 294 - -
Cca03g00310 366 SUPERFAMILY HMA, heavy metal-associated domain 157 219 IPR036163 GO:0046872
Cca03g00310 366 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 2 366 - -
Cca03g00310 366 MobiDBLite consensus disorder prediction 119 153 - -
Cca03g00310 366 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 2 366 IPR044577 GO:0046872
Cca03g00310 366 ProSiteProfiles Heavy-metal-associated domain profile. 164 210 IPR006121 GO:0046872
Cca03g00310 366 CDD HMA 65 121 IPR006121 GO:0046872
Cca03g00310 366 MobiDBLite consensus disorder prediction 222 264 - -
Cca03g00310 366 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00310 Cca-Chr3 4817301 4819569 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00310 - - ccaj:109796711 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00310 03 4817301 4819569 Cca09g02391 09 49304707 49306288 ECH
Cca03g00310 03 4817301 4819569 Cca03g00310 03 4817301 4819569 ECH
Cca09g02391 09 49304707 49306288 Cca03g00310 03 4817301 4819569 PCT