Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02351 ATGGGCAATTGCTGCTCCGACGTCGCCGGCGGACAAACCGCCATCGGCGCCACCGCCAACAGCCACCTTAATCCGGCCAACGCTCCCAACGACGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACCAAGGCCTCTACTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGGAGCACTCGAGGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATGTAAAGATGCTTAAGCTAGAAGAACAACAATATCTAGGTGAGGCAACCTGTGCATTATCTGAGATAATTACAAAGCTTGATCGATCGGTGACATTAGATTTACACAGAGAAGATTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAGGAAAGTGTTAGCTCAAAGACTACAATAGAGATGATACTCAGGTGTTCAGATTTGGAGTATAGGGATCTCTTCTCAAAAAGTGATCCCTTTCTATTGGTATCAAAAGTTGTGGAAGGTGGTAACCATATTCCAATTTGCAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTAAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATAATAGAGTGCTACAACTTTAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGAGTTGGAGAAGCTTTATTCTGTTGGCCAAGGAGAAAACTTTTTTTCGTCTGCCGCTGCGGGTCATAATTCTCAAAACAAGATGTTAAAGAGCCGGTTATTTGTGGATAAATTTGCTGAAAGTGTCCAATATACTTTCTTGGATTACTTGACTGGGGGATATGAGTTGAACTTTATGGTGGCCATTGATTTTACAGCTTCGAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCGGGACGGCCAAATGCATACCAGAGGGCAATAATAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAACGATTTCCTACGTGGGGATTTGGAGCACGACCAATTGATGGTCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGCCATTACTGTGAGGTGGAAGGCATTCAAGGAATTATGATGGCATACACAAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAACGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGAGGAAGAAAGTACTTTGTTTTGTTAATCATCACGGATGGAGTAGTGACAGATCTCCAAGAAACCAAAGATGCTCTCGTTAAAGCATCTGATCTACCGTTATCAATCCTTATTGTTGGCGTAGGAGGAGCAGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCGCGTGATATAGTCCAGTTTGTTCCATTTCGTGACGTGCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTAGCTGAATTACCTACTCAATTTTTAACTTACACGCGGAGCAGAAATATCCAACCTAGTCTCTAG 1740 0.427 MGNCCSDVAGGQTAIGATANSHLNPANAPNDAVDRFLRSRGYQGLYSQIELSFSASGLRDRDVLSKSDPMMVLYARGKNGALEELGRTEVILNSLNPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNVDVKMLKLEEQQYLGEATCALSEIITKLDRSVTLDLHREDSIRSTQSQNCGKLLVHAEESVSSKTTIEMILRCSDLEYRDLFSKSDPFLLVSKVVEGGNHIPICKTEVIKNDHNPIWKPVFLNIQQVGSKESPLIIECYNFNSNGKHDLMGKVQKSLVELEKLYSVGQGENFFSSAAAGHNSQNKMLKSRLFVDKFAESVQYTFLDYLTGGYELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIIEVGEVLQYYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLTYTRSRNIQPSL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02351 579 Pfam Copine 362 577 IPR010734 -
Cca09g02351 579 SMART C2_3c 48 161 IPR000008 -
Cca09g02351 579 SMART C2_3c 198 297 IPR000008 -
Cca09g02351 579 SMART VWA_4 341 538 IPR002035 -
Cca09g02351 579 Pfam C2 domain 198 289 IPR000008 -
Cca09g02351 579 Pfam C2 domain 54 155 IPR000008 -
Cca09g02351 579 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Cca09g02351 579 ProSiteProfiles VWFA domain profile. 343 562 IPR002035 -
Cca09g02351 579 SUPERFAMILY vWA-like 342 524 IPR036465 -
Cca09g02351 579 ProSiteProfiles C2 domain profile. 29 164 IPR000008 -
Cca09g02351 579 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 578 - -
Cca09g02351 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 288 IPR035892 -
Cca09g02351 579 CDD C2A_Copine 47 164 - -
Cca09g02351 579 Gene3D C2 domain 52 196 IPR035892 -
Cca09g02351 579 CDD vWA_copine_like 311 566 IPR010734 -
Cca09g02351 579 PANTHER COPINE 1 578 IPR045052 GO:0005544
Cca09g02351 579 CDD C2B_Copine 195 290 IPR037768 -
Cca09g02351 579 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 166 IPR035892 -
Cca09g02351 579 Gene3D C2 domain 197 319 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02351 Cca-Chr9 48805918 48813618 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02351 - - gmx:100807801 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02351 09 48805918 48813618 Cca09g02351 09 48805918 48813618 ECH
Cca09g02351 09 48805918 48813618 Cca03g00274 03 4007524 4016450 PCT